Wall clock time and date at job start Sun Mar 29 2020 22:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47030 * 300.00652 * 3 2 1 6 6 H 1.48502 * 109.47054 * 60.00108 * 3 2 1 7 7 C 1.38814 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85285 * 23.80711 * 10 9 7 12 12 C 1.53784 * 113.61742 * 155.00333 * 10 9 7 13 13 C 1.53779 * 87.08158 * 89.20020 * 12 10 9 14 14 H 1.08994 * 113.61287 * 140.06859 * 13 12 10 15 15 N 1.46507 * 113.61340 * 270.88653 * 13 12 10 16 16 C 1.34777 * 119.99632 * 203.46966 * 15 13 12 17 17 O 1.21282 * 120.00265 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99741 * 179.97438 * 16 15 13 19 19 C 1.53781 * 113.61455 * 180.02562 * 18 16 15 20 20 C 1.53786 * 87.17350 * 270.84572 * 19 18 16 21 21 C 1.53782 * 113.61177 * 82.50351 * 18 16 15 22 22 C 1.53777 * 87.17374 * 25.47760 * 13 12 10 23 23 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00318 * 0.02562 * 9 7 2 25 25 H 1.09005 * 113.60883 * 334.64988 * 12 10 9 26 26 H 1.08997 * 113.69242 * 203.76595 * 12 10 9 27 27 H 0.97003 * 120.00110 * 23.46850 * 15 13 12 28 28 H 1.09001 * 112.90802 * 311.25695 * 18 16 15 29 29 H 1.09002 * 113.61445 * 25.43572 * 19 18 16 30 30 H 1.09002 * 113.61408 * 156.25302 * 19 18 16 31 31 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 32 32 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 33 33 H 1.08997 * 113.61668 * 203.66205 * 21 18 16 34 34 H 1.08998 * 113.61674 * 334.48714 * 21 18 16 35 35 H 1.08998 * 113.61491 * 89.06957 * 22 13 12 36 36 H 1.08997 * 113.61545 * 219.97816 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2602 -4.8288 0.5949 13 6 0.7223 -5.0805 -0.8236 14 1 0.6500 -6.1369 -1.0821 15 7 -0.5018 -4.3353 -1.1278 16 6 -1.3378 -4.7760 -2.0888 17 8 -1.0769 -5.7898 -2.7013 18 6 -2.5973 -4.0098 -2.4013 19 6 -3.4417 -4.6426 -3.5200 20 6 -2.6219 -3.7999 -4.5113 21 6 -2.3749 -2.8195 -3.3493 22 6 2.0009 -4.4046 -1.3462 23 1 -0.4850 0.8401 0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 0.4928 -4.5188 1.3043 26 1 1.8859 -5.6366 0.9744 27 1 -0.7107 -3.5247 -0.6376 28 1 -3.1722 -3.7569 -1.5104 29 1 -3.2884 -5.7163 -3.6286 30 1 -4.4957 -4.3674 -3.4803 31 1 -1.7177 -4.2966 -4.8631 32 1 -3.2165 -3.3775 -5.3213 33 1 -3.1370 -2.0450 -3.2639 34 1 -1.3609 -2.4208 -3.3192 35 1 2.8299 -5.0960 -1.4970 36 1 1.8311 -3.7523 -2.2028 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021759760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:09 Heat of formation + Delta-G solvation = -4.111676 kcal Electronic energy + Delta-G solvation = -17459.256795 eV Core-core repulsion = 14751.168720 eV Total energy + Delta-G solvation = -2708.088075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60254 -40.00697 -37.89055 -35.47822 -34.07557 -31.83709 -27.81185 -26.56571 -26.52497 -26.16646 -24.28984 -22.29836 -20.71983 -19.87288 -19.21340 -18.00488 -17.00695 -16.66895 -16.57477 -16.13764 -15.82122 -15.17566 -15.12720 -14.80388 -14.17455 -13.55936 -13.49491 -13.29005 -13.20982 -12.95706 -12.82340 -12.54577 -12.11657 -11.96076 -11.76884 -11.71680 -11.33809 -11.32705 -11.15670 -10.84728 -10.73971 -9.94799 -9.01454 -7.95773 -5.23388 1.47955 1.49385 1.57045 1.58144 2.19236 2.55967 3.36741 3.55779 3.61935 3.68292 3.74289 3.88011 3.93382 4.01817 4.20363 4.30793 4.40158 4.67763 4.80307 4.82548 4.86637 4.88470 4.94992 5.01446 5.05848 5.10688 5.16828 5.21706 5.36158 5.47179 5.53043 5.73117 6.27995 6.54861 7.21823 7.34412 8.07052 8.30487 9.27067 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.007833 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.694221 B = 3573.702074 C = 4523.774609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.716 5.716 10 C 0.147 3.853 11 H 0.070 0.930 12 C -0.144 4.144 13 C 0.119 3.881 14 H 0.094 0.906 15 N -0.701 5.701 16 C 0.529 3.471 17 O -0.580 6.580 18 C -0.147 4.147 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.122 4.122 22 C -0.178 4.178 23 H 0.252 0.748 24 H 0.374 0.626 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.404 0.596 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.105 0.895 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -8.407 -2.944 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.356 5.356 10 C 0.036 3.964 11 H 0.088 0.912 12 C -0.183 4.183 13 C 0.014 3.986 14 H 0.112 0.888 15 N -0.352 5.352 16 C 0.317 3.683 17 O -0.461 6.461 18 C -0.168 4.168 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.159 4.159 22 C -0.220 4.220 23 H 0.061 0.939 24 H 0.208 0.792 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.241 0.759 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.919 -8.974 -3.339 10.346 hybrid contribution 0.152 1.504 0.193 1.524 sum -3.767 -7.470 -3.146 8.938 Atomic orbital electron populations 1.69752 1.06141 1.26029 1.59077 1.25445 0.96452 1.00610 1.03532 0.85153 0.78246 0.80272 0.76526 1.19447 1.22381 1.21997 1.19655 0.91541 0.85065 1.41437 0.90689 1.42350 1.05204 1.00507 1.87558 1.21529 0.95699 0.85023 0.94132 0.91203 1.23756 1.00221 0.99574 0.94779 1.21852 0.83775 0.95688 0.97271 0.88756 1.45960 1.22336 1.28724 1.38165 1.20581 0.84938 0.84386 0.78371 1.90597 1.76708 1.27128 1.51654 1.22500 0.94643 0.98520 1.01178 1.22750 0.99095 0.99816 0.92839 1.22881 1.00185 0.97249 0.97306 1.22852 1.02114 0.95807 0.95159 1.24254 0.98117 1.00060 0.99592 0.93893 0.79186 0.91544 0.85504 0.75865 0.86705 0.91533 0.86557 0.92317 0.89060 0.87165 0.93793 0.87646 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.99 13.06 21.65 0.28 -54.71 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.97 44.77 29.55 68.60 2.03 46.79 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.25 -13.07 9.97 84.03 0.84 -12.24 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.72 -33.98 5.19 -320.01 -1.66 -35.64 16 10 C 0.15 5.51 4.57 45.61 0.21 5.72 16 11 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 12 C -0.14 -4.33 7.58 31.12 0.24 -4.09 16 13 C 0.12 3.97 4.30 45.51 0.20 4.16 16 14 H 0.09 3.07 7.50 -2.39 -0.02 3.05 16 15 N -0.70 -24.86 5.12 -440.04 -2.25 -27.11 16 16 C 0.53 18.74 7.09 87.66 0.62 19.36 16 17 O -0.58 -23.31 15.38 -3.04 -0.05 -23.35 16 18 C -0.15 -4.23 4.34 -11.01 -0.05 -4.28 16 19 C -0.11 -2.60 7.45 31.12 0.23 -2.37 16 20 C -0.14 -3.60 7.75 31.20 0.24 -3.36 16 21 C -0.12 -3.50 7.67 31.20 0.24 -3.26 16 22 C -0.18 -6.26 7.70 31.21 0.24 -6.02 16 23 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.37 18.30 5.35 -92.70 -0.50 17.80 16 25 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.40 15.16 6.17 -92.71 -0.57 14.59 16 28 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.07 1.80 7.43 -2.39 -0.02 1.78 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.04 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.31 295.52 1.83 -61.48 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: 0.01 Total: 42.15 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.47 Total: -9.62 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -3.63 Total: -117.46 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.31 1.83 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021759760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.371 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds