Wall clock time and date at job start Sun Mar 29 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.57092 * 272.66175 * 11 10 9 13 13 C 1.34774 * 120.00168 * 248.67385 * 12 11 10 14 14 O 1.21281 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00304 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47635 * 179.97438 * 15 13 12 17 17 C 1.53780 * 113.61424 * 274.13753 * 16 15 13 18 18 C 1.53953 * 87.02097 * 220.04509 * 17 16 15 19 19 C 1.53775 * 113.61551 * 176.53083 * 16 15 13 20 20 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 21 21 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 22 22 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 23 23 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 24 24 H 1.08998 * 114.08759 * 139.78710 * 11 10 9 25 25 H 0.97000 * 120.00419 * 68.67621 * 12 11 10 26 26 H 1.09003 * 109.47256 * 300.00118 * 15 13 12 27 27 H 1.09002 * 109.47044 * 59.99918 * 15 13 12 28 28 H 1.08995 * 112.84586 * 45.32869 * 16 15 13 29 29 H 1.09004 * 113.61507 * 334.56424 * 17 16 15 30 30 H 1.09004 * 113.61286 * 105.46464 * 17 16 15 31 31 H 1.08998 * 113.53682 * 270.81213 * 18 17 16 32 32 H 1.08996 * 113.66757 * 139.93440 * 18 17 16 33 33 H 1.09001 * 113.61119 * 254.52787 * 19 16 15 34 34 H 1.08998 * 113.61940 * 25.34749 * 19 16 15 35 35 H 1.08996 * 113.46819 * 321.85844 * 20 9 7 36 36 H 1.09007 * 113.47055 * 92.24673 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8304 -3.9966 -2.4298 13 6 0.0977 -4.6695 -3.3390 14 8 -0.8411 -5.3479 -2.9794 15 6 0.4455 -4.5798 -4.8026 16 6 -0.5341 -5.4311 -5.6129 17 6 -0.1240 -6.9094 -5.7188 18 6 -0.5968 -6.8525 -7.1828 19 6 -0.3175 -5.3411 -7.1326 20 6 1.6717 -3.8136 -0.0623 21 1 -0.4850 0.8401 -0.0004 22 1 -0.6458 -2.9419 0.5050 23 1 -0.5617 -2.1435 -1.1235 24 1 -0.0867 -4.9727 -0.7557 25 1 1.5814 -3.4543 -2.7175 26 1 0.3809 -3.5416 -5.1285 27 1 1.4600 -4.9469 -4.9581 28 1 -1.5712 -5.2863 -5.3102 29 1 0.9483 -7.0738 -5.6123 30 1 -0.7193 -7.5736 -5.0922 31 1 -1.6513 -7.0977 -7.3095 32 1 0.0505 -7.3935 -7.8730 33 1 -1.0689 -4.7410 -7.6459 34 1 0.7013 -5.0744 -7.4135 35 1 2.6415 -4.0509 -0.4996 36 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030179637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:14 Heat of formation + Delta-G solvation = 31.939508 kcal Electronic energy + Delta-G solvation = -16865.380763 eV Core-core repulsion = 14158.855984 eV Total energy + Delta-G solvation = -2706.524779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80726 -38.56889 -37.29592 -33.20954 -31.92153 -30.24656 -27.51515 -25.61979 -24.60997 -24.08384 -22.76342 -20.20816 -19.37675 -19.22492 -16.85985 -16.60013 -15.74022 -15.32446 -14.97328 -14.59846 -14.51454 -13.76939 -13.51259 -12.96302 -12.71028 -12.53595 -12.47706 -11.83099 -11.60996 -11.34766 -11.33169 -10.88213 -10.65581 -10.60445 -10.32762 -10.20910 -10.18746 -9.92387 -9.41094 -9.39752 -8.83390 -8.29223 -6.93354 -5.81418 -3.13667 3.07161 3.35842 3.40809 3.43375 3.65609 4.42411 4.59567 4.62550 4.71633 4.85310 5.17895 5.25197 5.38927 5.44238 5.52333 5.55574 5.66555 5.69010 5.74492 5.83458 5.92445 6.06638 6.16949 6.24164 6.27040 6.41587 6.51659 6.55243 6.85985 7.18259 7.33407 7.53385 7.92390 8.09694 8.72302 8.99222 9.66181 10.60539 11.36659 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.005028 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.748736 B = 5567.528994 C = 5957.394522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.148 3.852 11 C 0.084 3.916 12 N -0.693 5.693 13 C 0.512 3.488 14 O -0.552 6.552 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.139 4.139 20 C 0.107 3.893 21 H 0.254 0.746 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.404 0.596 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -10.727 -11.904 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.022 3.978 11 C -0.023 4.023 12 N -0.343 5.343 13 C 0.298 3.702 14 O -0.431 6.431 15 C -0.172 4.172 16 C -0.110 4.110 17 C -0.171 4.171 18 C -0.180 4.180 19 C -0.177 4.177 20 C -0.020 4.020 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.238 0.762 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.931 -10.835 -11.618 15.913 hybrid contribution 0.803 1.378 0.212 1.609 sum 1.734 -9.457 -11.406 14.918 Atomic orbital electron populations 1.69862 1.05083 1.25460 1.55867 1.24840 0.95612 0.97641 1.02157 0.86120 0.78668 0.83504 0.77551 1.21607 1.20505 1.21609 1.18943 0.90355 0.81577 1.44214 0.90111 1.45842 1.05529 0.99178 1.82931 1.22491 0.88613 0.90029 0.96706 1.22612 0.99126 1.00124 0.80429 1.45509 1.33405 1.48924 1.06421 1.20595 0.82413 0.79093 0.88063 1.90645 1.29286 1.41496 1.81626 1.21688 1.00882 1.02557 0.92109 1.22301 1.00160 0.94956 0.93626 1.22958 1.00963 0.96977 0.96203 1.22827 1.01288 0.96626 0.97307 1.22984 1.01812 0.96641 0.96230 1.22779 0.95839 0.87336 0.96041 0.93586 0.94485 0.91839 0.88691 0.76196 0.88844 0.89209 0.88293 0.90501 0.91282 0.90364 0.91764 0.91563 0.90162 0.93912 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 11.81 55.49 0.66 -26.67 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.15 10.73 -15.06 -0.16 -6.31 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 9 N -0.61 -15.31 3.76 -184.62 -0.69 -16.00 16 10 C 0.15 3.56 7.06 -8.37 -0.06 3.51 16 11 C 0.08 1.63 4.61 -67.68 -0.31 1.32 16 12 N -0.69 -12.07 5.40 -53.49 -0.29 -12.36 16 13 C 0.51 8.49 7.83 -10.99 -0.09 8.41 16 14 O -0.55 -10.92 15.38 5.56 0.09 -10.83 16 15 C -0.13 -1.62 5.52 -27.88 -0.15 -1.77 16 16 C -0.09 -1.08 3.11 -89.81 -0.28 -1.36 16 17 C -0.13 -1.45 7.65 -25.83 -0.20 -1.65 16 18 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 19 C -0.14 -1.31 7.65 -25.92 -0.20 -1.51 16 20 C 0.11 2.16 8.44 -8.51 -0.07 2.08 16 21 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 1.70 7.57 -51.93 -0.39 1.30 16 24 H 0.10 1.82 7.45 -51.93 -0.39 1.43 16 25 H 0.40 6.64 8.76 -40.82 -0.36 6.28 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 28 H 0.10 1.35 7.73 -51.93 -0.40 0.95 16 29 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -31.80 300.11 -8.28 -40.08 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.71 Total: 3.50 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.82 Total: 0.96 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.33 Total: -55.03 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.80 -8.28 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030179637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.017 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds