Wall clock time and date at job start Sun Mar 29 2020 22:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46500 * 114.57092 * 272.66175 * 11 10 9 13 13 C 1.34774 * 120.00168 * 248.67385 * 12 11 10 14 14 O 1.21281 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00304 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47635 * 179.97438 * 15 13 12 17 17 C 1.53780 * 113.61424 * 274.13753 * 16 15 13 18 18 C 1.53953 * 87.02097 * 220.04509 * 17 16 15 19 19 C 1.53775 * 113.61551 * 176.53083 * 16 15 13 20 20 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 21 21 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 22 22 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 23 23 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 24 24 H 1.08998 * 114.08759 * 139.78710 * 11 10 9 25 25 H 0.97000 * 120.00419 * 68.67621 * 12 11 10 26 26 H 1.09003 * 109.47256 * 300.00118 * 15 13 12 27 27 H 1.09002 * 109.47044 * 59.99918 * 15 13 12 28 28 H 1.08995 * 112.84586 * 45.32869 * 16 15 13 29 29 H 1.09004 * 113.61507 * 334.56424 * 17 16 15 30 30 H 1.09004 * 113.61286 * 105.46464 * 17 16 15 31 31 H 1.08998 * 113.53682 * 270.81213 * 18 17 16 32 32 H 1.08996 * 113.66757 * 139.93440 * 18 17 16 33 33 H 1.09001 * 113.61119 * 254.52787 * 19 16 15 34 34 H 1.08998 * 113.61940 * 25.34749 * 19 16 15 35 35 H 1.08996 * 113.46819 * 321.85844 * 20 9 7 36 36 H 1.09007 * 113.47055 * 92.24673 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8304 -3.9966 -2.4298 13 6 0.0977 -4.6695 -3.3390 14 8 -0.8411 -5.3479 -2.9794 15 6 0.4455 -4.5798 -4.8026 16 6 -0.5341 -5.4311 -5.6129 17 6 -0.1240 -6.9094 -5.7188 18 6 -0.5968 -6.8525 -7.1828 19 6 -0.3175 -5.3411 -7.1326 20 6 1.6717 -3.8136 -0.0623 21 1 -0.4850 0.8401 -0.0004 22 1 -0.6458 -2.9419 0.5050 23 1 -0.5617 -2.1435 -1.1235 24 1 -0.0867 -4.9727 -0.7557 25 1 1.5814 -3.4543 -2.7175 26 1 0.3809 -3.5416 -5.1285 27 1 1.4600 -4.9469 -4.9581 28 1 -1.5712 -5.2863 -5.3102 29 1 0.9483 -7.0738 -5.6123 30 1 -0.7193 -7.5736 -5.0922 31 1 -1.6513 -7.0977 -7.3095 32 1 0.0505 -7.3935 -7.8730 33 1 -1.0689 -4.7410 -7.6459 34 1 0.7013 -5.0744 -7.4135 35 1 2.6415 -4.0509 -0.4996 36 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030179637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:13 Heat of formation + Delta-G solvation = 10.979083 kcal Electronic energy + Delta-G solvation = -16866.289675 eV Core-core repulsion = 14158.855984 eV Total energy + Delta-G solvation = -2707.433691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14972 -39.84211 -38.68619 -34.91039 -33.77627 -31.36348 -29.42366 -26.41048 -26.40237 -25.51734 -24.22022 -21.55372 -20.95680 -20.17952 -18.74790 -17.99410 -17.03180 -16.88460 -16.51625 -15.91570 -15.64063 -15.48913 -14.87840 -14.62127 -14.29488 -13.86099 -13.34922 -13.23466 -13.18084 -12.78912 -12.72932 -12.42307 -12.28979 -12.09330 -11.79433 -11.46845 -11.28732 -11.18314 -11.02419 -10.95443 -10.67973 -9.85802 -8.97180 -7.93048 -5.26588 1.46687 1.48017 1.57679 1.73473 2.31156 2.46835 3.29666 3.44270 3.67703 3.78693 3.83332 3.87699 4.04122 4.15367 4.49207 4.53015 4.56321 4.63490 4.77149 4.79282 4.90247 4.93296 4.96170 5.06150 5.13264 5.15777 5.19787 5.22959 5.45256 5.45617 5.68670 5.74754 5.87595 6.71593 6.87304 7.36919 7.58288 8.58291 9.25678 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.005028 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.748736 B = 5567.528994 C = 5957.394522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.261 1.261 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.092 0.908 9 N -0.632 5.632 10 C 0.144 3.856 11 C 0.109 3.891 12 N -0.693 5.693 13 C 0.509 3.491 14 O -0.587 6.587 15 C -0.123 4.123 16 C -0.103 4.103 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.128 4.128 20 C 0.115 3.885 21 H 0.247 0.753 22 H 0.022 0.978 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.410 0.590 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -11.295 -13.379 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.217 1.217 5 H -0.185 1.185 6 H -0.224 1.224 7 C -0.356 4.356 8 H 0.110 0.890 9 N -0.358 5.358 10 C 0.016 3.984 11 C 0.002 3.998 12 N -0.342 5.342 13 C 0.298 3.702 14 O -0.467 6.467 15 C -0.162 4.162 16 C -0.122 4.122 17 C -0.175 4.175 18 C -0.174 4.174 19 C -0.165 4.165 20 C -0.011 4.011 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.120 0.880 25 H 0.246 0.754 26 H 0.123 0.877 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.085 -11.434 -13.109 17.666 hybrid contribution 0.116 1.478 0.698 1.639 sum 3.201 -9.956 -12.411 16.230 Atomic orbital electron populations 1.70064 1.06830 1.25675 1.57949 1.25703 0.96375 1.01172 1.02763 0.85031 0.78025 0.78913 0.77155 1.21722 1.18486 1.22377 1.19404 0.91130 0.82641 1.42453 0.89009 1.46102 1.06001 1.00687 1.83047 1.22463 0.88300 0.91906 0.95703 1.22253 0.98209 0.97628 0.81756 1.45535 1.33804 1.49289 1.05609 1.21433 0.81365 0.77805 0.89641 1.90633 1.30725 1.42924 1.82466 1.21746 1.02479 1.03591 0.88422 1.22319 0.98619 0.95730 0.95516 1.23005 1.01413 0.95835 0.97199 1.22808 1.01580 0.96740 0.96302 1.22964 1.02974 0.96799 0.93802 1.22873 0.97074 0.84247 0.96886 0.94393 0.96076 0.95506 0.87979 0.75428 0.87682 0.86236 0.91022 0.89270 0.93230 0.90527 0.90039 0.91201 0.88383 0.91481 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.51 11.81 21.65 0.26 -58.25 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.98 44.92 29.56 68.60 2.03 46.95 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.23 -12.42 10.73 84.04 0.90 -11.52 16 8 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 9 N -0.63 -31.58 3.76 -738.02 -2.78 -34.36 16 10 C 0.14 7.06 7.06 83.27 0.59 7.65 16 11 C 0.11 4.19 4.61 45.55 0.21 4.40 16 12 N -0.69 -23.29 5.40 -441.53 -2.39 -25.67 16 13 C 0.51 16.39 7.83 87.66 0.69 17.08 16 14 O -0.59 -23.25 15.38 -3.03 -0.05 -23.29 16 15 C -0.12 -2.74 5.52 29.85 0.16 -2.57 16 16 C -0.10 -2.28 3.11 -10.27 -0.03 -2.32 16 17 C -0.14 -2.77 7.65 31.18 0.24 -2.53 16 18 C -0.14 -2.20 8.09 31.18 0.25 -1.94 16 19 C -0.13 -2.06 7.65 31.12 0.24 -1.83 16 20 C 0.11 4.42 8.44 83.18 0.70 5.12 16 21 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 22 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 24 H 0.10 3.83 7.45 -2.39 -0.02 3.81 16 25 H 0.41 12.75 8.76 -92.71 -0.81 11.93 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.12 1.99 7.87 -2.39 -0.02 1.97 16 28 H 0.07 1.98 7.73 -2.39 -0.02 1.96 16 29 H 0.09 1.57 7.92 -2.38 -0.02 1.55 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -69.46 300.11 1.74 -67.72 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.25 Total: 18.69 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.42 Total: 8.22 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.91 Total: -118.29 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.46 1.74 -67.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030179637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.704 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds