Wall clock time and date at job start Sun Mar 29 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47060 * 136.06025 * 0.27775 * 9 7 2 11 11 C 1.53491 * 87.98812 * 152.84024 * 10 9 7 12 12 C 1.47067 * 136.05686 * 179.90721 * 9 7 2 13 13 H 1.08993 * 113.46696 * 92.37430 * 12 9 7 14 14 C 1.53007 * 113.46428 * 321.93725 * 12 9 7 15 15 N 1.46499 * 109.46895 * 74.50746 * 14 12 9 16 16 C 1.34778 * 119.99526 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00291 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99849 * 180.02562 * 16 15 14 19 19 C 1.53783 * 113.61209 * 279.13114 * 18 16 15 20 20 C 1.53953 * 87.01982 * 220.05107 * 19 18 16 21 21 C 1.53772 * 87.11259 * 25.36228 * 20 19 18 22 22 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 23 23 H 1.09000 * 113.46952 * 267.62626 * 10 9 7 24 24 H 1.09000 * 113.46498 * 38.00179 * 10 9 7 25 25 H 1.09005 * 114.20364 * 139.65400 * 11 10 9 26 26 H 1.09001 * 114.20807 * 272.28546 * 11 10 9 27 27 H 1.09005 * 109.46791 * 194.50263 * 14 12 9 28 28 H 1.08996 * 109.47092 * 314.50405 * 14 12 9 29 29 H 0.96999 * 120.00652 * 359.97438 * 15 14 12 30 30 H 1.08997 * 112.85593 * 50.32798 * 18 16 15 31 31 H 1.09003 * 113.61255 * 334.57120 * 19 18 16 32 32 H 1.08998 * 113.61127 * 105.46967 * 19 18 16 33 33 H 1.09003 * 113.53724 * 270.80963 * 20 19 18 34 34 H 1.09002 * 113.66842 * 139.93936 * 20 19 18 35 35 H 1.09001 * 113.61388 * 220.08741 * 21 20 19 36 36 H 1.09002 * 113.61442 * 89.18713 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.0876 -2.7949 0.0089 11 6 0.3418 -4.0952 -0.6844 12 6 1.6800 -3.8154 0.0077 13 1 1.7500 -4.2446 1.0072 14 6 2.8945 -4.1422 -0.8637 15 7 4.1145 -3.6904 -0.1902 16 6 5.3147 -3.8747 -0.7750 17 8 5.3848 -4.4150 -1.8586 18 6 6.5698 -3.4106 -0.0819 19 6 6.8467 -1.9074 -0.2508 20 6 8.3313 -2.2811 -0.4140 21 6 7.8509 -3.6603 -0.8952 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4933 -2.9495 1.0087 24 1 -0.7226 -2.1611 -0.6101 25 1 -0.1730 -4.9855 -0.3231 26 1 0.3792 -4.0307 -1.7719 27 1 2.9463 -5.2189 -1.0256 28 1 2.8000 -3.6345 -1.8236 29 1 4.0586 -3.2586 0.6766 30 1 6.6345 -3.7531 0.9508 31 1 6.4028 -1.4799 -1.1499 32 1 6.6387 -1.3218 0.6446 33 1 8.8781 -2.3135 0.5284 34 1 8.8456 -1.7049 -1.1832 35 1 8.4525 -4.4878 -0.5191 36 1 7.6820 -3.7130 -1.9707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038000131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:50 Heat of formation + Delta-G solvation = 32.461582 kcal Electronic energy + Delta-G solvation = -17287.405402 eV Core-core repulsion = 14580.903262 eV Total energy + Delta-G solvation = -2706.502140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96568 -38.35568 -37.06553 -33.96266 -32.22775 -28.49238 -27.91211 -25.89894 -25.51539 -23.48446 -22.02861 -20.56348 -19.45867 -19.01383 -17.35744 -16.49694 -15.73995 -15.36087 -15.16587 -14.52474 -14.19830 -13.85856 -13.39356 -12.93261 -12.66302 -12.39381 -12.15683 -11.72934 -11.53934 -11.13013 -11.09736 -10.98220 -10.79793 -10.57375 -10.51258 -10.36072 -9.98705 -9.84868 -9.49651 -9.11357 -8.83066 -8.50846 -6.91391 -5.78488 -3.11042 2.99865 3.36354 3.40424 3.43125 3.64521 4.41592 4.56686 4.67063 4.82422 4.85390 5.17766 5.32985 5.39858 5.56289 5.57892 5.69198 5.76321 5.83983 5.90874 5.91708 5.98907 6.12140 6.13683 6.32770 6.40885 6.44872 6.59531 6.73124 6.95106 7.21574 7.38707 7.56236 7.95828 7.98157 8.64408 9.01336 9.68604 10.61691 11.38844 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.008427 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.984892 B = 3321.931718 C = 4549.799222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.162 4.162 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.712 5.712 16 C 0.518 3.482 17 O -0.555 6.555 18 C -0.139 4.139 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.116 4.116 22 H 0.253 0.747 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.403 0.597 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 -6.795 1.794 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.201 4.201 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.361 5.361 16 C 0.304 3.696 17 O -0.434 6.434 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.180 4.180 21 C -0.154 4.154 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.265 -6.797 1.029 12.355 hybrid contribution 0.284 1.179 0.647 1.374 sum 10.549 -5.619 1.676 12.069 Atomic orbital electron populations 1.69822 1.04987 1.25275 1.56491 1.24777 0.95641 0.97428 1.02613 0.86183 0.78589 0.83712 0.77661 1.21568 1.21684 1.20656 1.18858 0.90027 0.81332 1.43805 0.90148 1.45652 1.02604 0.98594 1.85901 1.22030 0.88729 0.90140 0.96538 1.23612 0.96997 0.99052 1.00419 1.22355 0.92107 0.87728 0.95810 0.93498 1.21791 0.83307 0.98063 0.97250 1.45999 1.06044 1.60594 1.23512 1.20446 0.84872 0.78534 0.85768 1.90640 1.87253 1.43993 1.21469 1.22770 0.93538 0.98770 1.00920 1.22855 0.96321 0.93810 1.03226 1.22866 0.96284 0.97340 1.01507 1.22769 0.94384 0.97074 1.01163 0.93683 0.95739 0.90998 0.92349 0.90248 0.92441 0.91255 0.76297 0.87317 0.89481 0.90557 0.90117 0.91170 0.91365 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.51 55.49 0.64 -26.32 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16 8 H 0.08 2.05 7.50 -52.49 -0.39 1.66 16 9 N -0.60 -14.66 3.65 -177.20 -0.65 -15.31 16 10 C 0.15 3.47 7.40 -8.53 -0.06 3.41 16 11 C -0.16 -2.97 8.01 -26.36 -0.21 -3.18 16 12 C 0.13 2.48 4.10 -72.54 -0.30 2.18 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.23 5.51 -4.04 -0.02 2.21 16 15 N -0.71 -12.31 5.33 -60.29 -0.32 -12.63 16 16 C 0.52 8.89 7.35 -10.98 -0.08 8.81 16 17 O -0.55 -11.36 15.91 5.55 0.09 -11.27 16 18 C -0.14 -1.83 4.14 -90.96 -0.38 -2.21 16 19 C -0.12 -1.59 7.64 -25.83 -0.20 -1.79 16 20 C -0.14 -1.50 8.09 -25.83 -0.21 -1.71 16 21 C -0.12 -1.40 7.40 -25.92 -0.19 -1.59 16 22 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.85 7.13 -51.93 -0.37 1.48 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.40 6.63 8.37 -40.82 -0.34 6.29 16 30 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 LS Contribution 299.36 15.07 4.51 4.51 Total: -1.00 -31.30 299.36 -8.36 -39.65 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.70 Total: 4.57 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.90 Total: -0.03 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.33 Total: -54.26 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.30 -8.36 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038000131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.113 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds