Wall clock time and date at job start Sun Mar 29 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47060 * 136.06025 * 0.27775 * 9 7 2 11 11 C 1.53491 * 87.98812 * 152.84024 * 10 9 7 12 12 C 1.47067 * 136.05686 * 179.90721 * 9 7 2 13 13 H 1.08993 * 113.46696 * 92.37430 * 12 9 7 14 14 C 1.53007 * 113.46428 * 321.93725 * 12 9 7 15 15 N 1.46499 * 109.46895 * 74.50746 * 14 12 9 16 16 C 1.34778 * 119.99526 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00291 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99849 * 180.02562 * 16 15 14 19 19 C 1.53783 * 113.61209 * 279.13114 * 18 16 15 20 20 C 1.53953 * 87.01982 * 220.05107 * 19 18 16 21 21 C 1.53772 * 87.11259 * 25.36228 * 20 19 18 22 22 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 23 23 H 1.09000 * 113.46952 * 267.62626 * 10 9 7 24 24 H 1.09000 * 113.46498 * 38.00179 * 10 9 7 25 25 H 1.09005 * 114.20364 * 139.65400 * 11 10 9 26 26 H 1.09001 * 114.20807 * 272.28546 * 11 10 9 27 27 H 1.09005 * 109.46791 * 194.50263 * 14 12 9 28 28 H 1.08996 * 109.47092 * 314.50405 * 14 12 9 29 29 H 0.96999 * 120.00652 * 359.97438 * 15 14 12 30 30 H 1.08997 * 112.85593 * 50.32798 * 18 16 15 31 31 H 1.09003 * 113.61255 * 334.57120 * 19 18 16 32 32 H 1.08998 * 113.61127 * 105.46967 * 19 18 16 33 33 H 1.09003 * 113.53724 * 270.80963 * 20 19 18 34 34 H 1.09002 * 113.66842 * 139.93936 * 20 19 18 35 35 H 1.09001 * 113.61388 * 220.08741 * 21 20 19 36 36 H 1.09002 * 113.61442 * 89.18713 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.0876 -2.7949 0.0089 11 6 0.3418 -4.0952 -0.6844 12 6 1.6800 -3.8154 0.0077 13 1 1.7500 -4.2446 1.0072 14 6 2.8945 -4.1422 -0.8637 15 7 4.1145 -3.6904 -0.1902 16 6 5.3147 -3.8747 -0.7750 17 8 5.3848 -4.4150 -1.8586 18 6 6.5698 -3.4106 -0.0819 19 6 6.8467 -1.9074 -0.2508 20 6 8.3313 -2.2811 -0.4140 21 6 7.8509 -3.6603 -0.8952 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4933 -2.9495 1.0087 24 1 -0.7226 -2.1611 -0.6101 25 1 -0.1730 -4.9855 -0.3231 26 1 0.3792 -4.0307 -1.7719 27 1 2.9463 -5.2189 -1.0256 28 1 2.8000 -3.6345 -1.8236 29 1 4.0586 -3.2586 0.6766 30 1 6.6345 -3.7531 0.9508 31 1 6.4028 -1.4799 -1.1499 32 1 6.6387 -1.3218 0.6446 33 1 8.8781 -2.3135 0.5284 34 1 8.8456 -1.7049 -1.1832 35 1 8.4525 -4.4878 -0.5191 36 1 7.6820 -3.7130 -1.9707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038000131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:50 Heat of formation + Delta-G solvation = 11.784750 kcal Electronic energy + Delta-G solvation = -17288.302017 eV Core-core repulsion = 14580.903262 eV Total energy + Delta-G solvation = -2707.398755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24071 -39.96321 -38.28266 -35.46413 -34.23762 -30.09776 -29.67827 -27.08034 -26.50581 -25.39895 -23.59218 -21.86004 -21.04591 -20.25147 -18.86443 -18.10668 -17.11907 -17.05297 -16.45237 -16.06428 -15.61323 -15.58785 -14.93504 -14.59112 -13.83824 -13.63694 -13.41244 -13.35230 -12.96687 -12.92510 -12.72769 -12.59604 -12.29634 -12.12086 -11.84760 -11.64102 -11.43648 -11.30219 -11.16597 -10.85854 -10.56894 -9.98603 -8.89352 -7.87115 -5.18994 1.43863 1.45904 1.53209 1.65928 2.30421 2.48369 3.35308 3.43687 3.57011 3.68249 3.81542 3.91758 3.94500 4.11881 4.27545 4.33971 4.63568 4.67574 4.71455 4.79399 4.85568 4.88896 5.02945 5.04586 5.08095 5.09488 5.19618 5.32842 5.46290 5.55108 5.59728 5.73886 5.96995 6.61918 6.94016 7.28884 7.64563 8.64237 9.30702 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.008427 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.984892 B = 3321.931718 C = 4549.799222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.967 3.033 4 H -0.295 1.295 5 H -0.298 1.298 6 H -0.261 1.261 7 C -0.206 4.206 8 H 0.089 0.911 9 N -0.630 5.630 10 C 0.142 3.858 11 C -0.136 4.136 12 C 0.135 3.865 13 H 0.071 0.929 14 C 0.129 3.871 15 N -0.711 5.711 16 C 0.512 3.488 17 O -0.593 6.593 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.118 4.118 22 H 0.245 0.755 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.408 0.592 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.190 -7.831 3.024 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.185 1.185 7 C -0.334 4.334 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.017 3.983 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.088 0.912 14 C 0.004 3.996 15 N -0.360 5.360 16 C 0.301 3.699 17 O -0.474 6.474 18 C -0.157 4.157 19 C -0.170 4.170 20 C -0.163 4.163 21 C -0.156 4.156 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.243 0.757 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.277 -7.863 2.278 14.756 hybrid contribution -0.344 1.414 0.243 1.476 sum 11.933 -6.448 2.521 13.796 Atomic orbital electron populations 1.70010 1.06394 1.25211 1.58929 1.25555 0.96439 1.00620 1.03931 0.85234 0.78143 0.79861 0.77155 1.22215 1.22456 1.18511 1.19232 0.90629 0.82400 1.41138 0.89351 1.45978 1.03613 1.00066 1.85905 1.22046 0.87843 0.92026 0.96407 1.23439 0.95956 0.98151 0.99944 1.22494 0.92938 0.84778 0.96955 0.91214 1.21574 0.83716 0.98728 0.95594 1.46017 1.05883 1.60527 1.23620 1.21212 0.85831 0.77533 0.85365 1.90621 1.87828 1.45736 1.23240 1.22948 0.91565 0.98971 1.02208 1.22880 0.98178 0.93435 1.02473 1.22845 0.94838 0.95715 1.02852 1.22762 0.94224 0.98997 0.99640 0.94620 0.95839 0.94682 0.88154 0.90486 0.90566 0.94486 0.75663 0.84284 0.92103 0.89570 0.87447 0.90631 0.89392 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.67 11.51 21.65 0.25 -57.42 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.21 -10.96 10.55 84.03 0.89 -10.07 16 8 H 0.09 4.44 7.50 -2.91 -0.02 4.41 16 9 N -0.63 -30.46 3.65 -714.53 -2.61 -33.07 16 10 C 0.14 6.55 7.40 83.17 0.62 7.16 16 11 C -0.14 -4.73 8.01 30.84 0.25 -4.48 16 12 C 0.13 4.95 4.10 41.70 0.17 5.12 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.13 4.60 5.51 86.38 0.48 5.07 16 15 N -0.71 -23.49 5.33 -463.04 -2.47 -25.96 16 16 C 0.51 16.99 7.35 87.66 0.64 17.63 16 17 O -0.59 -24.13 15.91 -3.05 -0.05 -24.18 16 18 C -0.14 -3.26 4.14 -11.01 -0.05 -3.31 16 19 C -0.13 -3.09 7.64 31.18 0.24 -2.86 16 20 C -0.13 -2.25 8.09 31.18 0.25 -2.00 16 21 C -0.12 -2.60 7.40 31.12 0.23 -2.37 16 22 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.03 1.85 7.13 -2.39 -0.02 1.84 16 25 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 26 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 27 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.41 12.59 8.37 -92.71 -0.78 11.82 16 30 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.86 7.45 -2.39 -0.02 1.84 16 Total: -1.00 -69.16 299.36 1.61 -67.55 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.28 Total: 19.43 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 4.18 Total: 6.27 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.83 Total: -116.45 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.16 1.61 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038000131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.331 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds