Wall clock time and date at job start Sun Mar 29 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48508 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47065 * 299.99436 * 3 2 1 6 6 H 1.48498 * 109.47654 * 59.99665 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53778 * 87.08035 * 89.11438 * 12 10 9 14 14 H 1.09004 * 113.61682 * 270.87724 * 13 12 10 15 15 C 1.53003 * 113.61196 * 140.06532 * 13 12 10 16 16 N 1.46497 * 109.47017 * 174.99730 * 15 13 12 17 17 C 1.34783 * 120.00028 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00180 * 180.02562 * 17 16 15 20 20 C 1.52997 * 117.49593 * 248.61932 * 19 17 16 21 21 C 1.52993 * 117.49837 * 179.97438 * 19 17 16 22 22 C 1.53778 * 87.08449 * 25.43264 * 13 12 10 23 23 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 25 25 H 1.08998 * 113.61103 * 203.66698 * 12 10 9 26 26 H 1.08997 * 113.61087 * 334.48007 * 12 10 9 27 27 H 1.08994 * 109.47311 * 294.99941 * 15 13 12 28 28 H 1.08999 * 109.47124 * 54.99885 * 15 13 12 29 29 H 0.96999 * 120.00188 * 0.02562 * 16 15 13 30 30 H 1.09003 * 115.54979 * 34.32315 * 19 17 16 31 31 H 1.08995 * 117.50349 * 359.97438 * 20 19 17 32 32 H 1.09003 * 117.49656 * 145.02204 * 20 19 17 33 33 H 1.08999 * 117.50097 * 214.97428 * 21 19 17 34 34 H 1.09000 * 117.50018 * 359.97438 * 21 19 17 35 35 H 1.08993 * 113.61229 * 220.02023 * 22 13 12 36 36 H 1.09000 * 113.61263 * 89.11673 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 0.7206 -5.0791 -0.8221 14 1 -0.1902 -4.5240 -1.0470 15 6 0.6179 -6.5617 -1.1859 16 7 -0.0139 -6.6992 -2.5005 17 6 -0.2101 -7.9234 -3.0291 18 8 0.1367 -8.9110 -2.4166 19 6 -0.8594 -8.0649 -4.3816 20 6 -2.2598 -8.6792 -4.4321 21 6 -1.0538 -9.4810 -4.9272 22 6 1.9992 -4.4021 -1.3433 23 1 -0.4850 0.8400 -0.0004 24 1 0.3557 -2.3881 -0.0002 25 1 1.8872 -5.6366 0.9736 26 1 0.4949 -4.5190 1.3076 27 1 1.6160 -6.9987 -1.2149 28 1 0.0166 -7.0785 -0.4380 29 1 -0.2909 -5.9093 -2.9905 30 1 -0.6291 -7.2767 -5.0985 31 1 -2.7112 -8.9814 -3.4872 32 1 -2.9510 -8.2952 -5.1823 33 1 -0.9521 -9.6243 -6.0030 34 1 -0.7117 -10.3103 -4.3081 35 1 1.8294 -3.7479 -2.1983 36 1 2.8281 -5.0934 -1.4960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086288141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:35 Heat of formation + Delta-G solvation = 11.423511 kcal Electronic energy + Delta-G solvation = -16385.303148 eV Core-core repulsion = 13677.888728 eV Total energy + Delta-G solvation = -2707.414419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00499 -38.62361 -36.31349 -34.59808 -33.19908 -30.22512 -27.76910 -25.07652 -24.40763 -23.37439 -22.64537 -21.59685 -20.14496 -18.42164 -17.53991 -17.20014 -16.07422 -15.46430 -15.02208 -14.80291 -14.44311 -14.02157 -13.70868 -13.21564 -12.91188 -12.68465 -12.28680 -11.93809 -11.78355 -11.41227 -11.06114 -10.87897 -10.84187 -10.73328 -10.49213 -10.17516 -10.10405 -9.77344 -9.71434 -9.46372 -8.98867 -8.90108 -7.02245 -5.83087 -3.12143 2.45853 3.15413 3.39966 3.46063 3.48116 3.68060 4.53066 4.53915 4.62552 4.67471 4.94615 5.05433 5.09465 5.23337 5.35951 5.43432 5.52995 5.61948 5.69565 5.72607 5.86195 5.89753 5.95435 6.09934 6.20273 6.36049 6.43767 6.58414 6.73009 6.88904 7.02778 7.53729 7.67531 8.22998 8.36153 9.46924 10.04418 10.38638 11.39450 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042906 B = 0.004036 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.438796 B = 6935.928814 C = 7268.961360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.719 5.719 17 C 0.539 3.461 18 O -0.549 6.549 19 C -0.195 4.195 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.168 4.168 23 H 0.255 0.745 24 H 0.385 0.615 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.403 0.597 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -14.791 -7.823 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.007 3.993 16 N -0.370 5.370 17 C 0.325 3.675 18 O -0.427 6.427 19 C -0.216 4.216 20 C -0.191 4.191 21 C -0.187 4.187 22 C -0.209 4.209 23 H 0.065 0.935 24 H 0.219 0.781 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.859 -15.304 -7.338 17.074 hybrid contribution -0.050 1.415 -0.343 1.457 sum -1.909 -13.890 -7.680 15.986 Atomic orbital electron populations 1.69669 1.05148 1.25688 1.57571 1.24763 0.95540 0.97799 1.02781 0.86099 0.78831 0.83950 0.77200 1.20475 1.21839 1.21815 1.19347 0.91170 0.83965 1.42829 0.90923 1.42179 1.05686 0.99449 1.87135 1.21059 0.95118 0.85594 0.92767 0.91938 1.23445 1.00511 0.99693 0.95132 1.22709 0.99579 0.92919 0.98609 0.88890 1.21486 0.97565 0.97030 0.83180 1.46008 1.61869 1.08065 1.21030 1.19661 0.78350 0.83213 0.86271 1.90675 1.51622 1.37835 1.62591 1.22224 1.02168 1.00071 0.97145 1.22935 0.89713 1.02731 1.03699 1.22941 1.01038 0.93337 1.01370 1.23887 0.95671 0.99615 1.01755 0.93482 0.78116 0.90469 0.91316 0.91609 0.91903 0.76215 0.85827 0.88283 0.87788 0.88014 0.87484 0.91511 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.28 5.31 -52.64 -0.28 -17.56 16 10 C 0.17 3.24 4.56 -67.12 -0.31 2.93 16 11 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 12 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 13 C -0.12 -1.78 3.63 -89.81 -0.33 -2.11 16 14 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 15 C 0.13 1.79 5.51 -4.04 -0.02 1.76 16 16 N -0.72 -9.00 5.56 -60.30 -0.33 -9.34 16 17 C 0.54 7.22 7.61 -10.98 -0.08 7.13 16 18 O -0.55 -9.34 16.26 5.56 0.09 -9.25 16 19 C -0.19 -1.92 6.19 -91.78 -0.57 -2.49 16 20 C -0.15 -1.29 10.24 -26.71 -0.27 -1.56 16 21 C -0.15 -1.33 10.05 -26.71 -0.27 -1.60 16 22 C -0.17 -2.79 7.43 -25.92 -0.19 -2.98 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.38 9.95 7.90 -40.82 -0.32 9.63 16 25 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.40 4.35 8.47 -40.82 -0.35 4.00 16 30 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -31.35 306.39 -8.34 -39.68 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.65 Total: 10.46 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.48 Total: -8.70 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.11 Total: -53.83 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.35 -8.34 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086288141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.105 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds