Wall clock time and date at job start Sun Mar 29 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48508 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47065 * 299.99436 * 3 2 1 6 6 H 1.48498 * 109.47654 * 59.99665 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53778 * 87.08035 * 89.11438 * 12 10 9 14 14 H 1.09004 * 113.61682 * 270.87724 * 13 12 10 15 15 C 1.53003 * 113.61196 * 140.06532 * 13 12 10 16 16 N 1.46497 * 109.47017 * 174.99730 * 15 13 12 17 17 C 1.34783 * 120.00028 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99795 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00180 * 180.02562 * 17 16 15 20 20 C 1.52997 * 117.49593 * 248.61932 * 19 17 16 21 21 C 1.52993 * 117.49837 * 179.97438 * 19 17 16 22 22 C 1.53778 * 87.08449 * 25.43264 * 13 12 10 23 23 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 25 25 H 1.08998 * 113.61103 * 203.66698 * 12 10 9 26 26 H 1.08997 * 113.61087 * 334.48007 * 12 10 9 27 27 H 1.08994 * 109.47311 * 294.99941 * 15 13 12 28 28 H 1.08999 * 109.47124 * 54.99885 * 15 13 12 29 29 H 0.96999 * 120.00188 * 0.02562 * 16 15 13 30 30 H 1.09003 * 115.54979 * 34.32315 * 19 17 16 31 31 H 1.08995 * 117.50349 * 359.97438 * 20 19 17 32 32 H 1.09003 * 117.49656 * 145.02204 * 20 19 17 33 33 H 1.08999 * 117.50097 * 214.97428 * 21 19 17 34 34 H 1.09000 * 117.50018 * 359.97438 * 21 19 17 35 35 H 1.08993 * 113.61229 * 220.02023 * 22 13 12 36 36 H 1.09000 * 113.61263 * 89.11673 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 0.7206 -5.0791 -0.8221 14 1 -0.1902 -4.5240 -1.0470 15 6 0.6179 -6.5617 -1.1859 16 7 -0.0139 -6.6992 -2.5005 17 6 -0.2101 -7.9234 -3.0291 18 8 0.1367 -8.9110 -2.4166 19 6 -0.8594 -8.0649 -4.3816 20 6 -2.2598 -8.6792 -4.4321 21 6 -1.0538 -9.4810 -4.9272 22 6 1.9992 -4.4021 -1.3433 23 1 -0.4850 0.8400 -0.0004 24 1 0.3557 -2.3881 -0.0002 25 1 1.8872 -5.6366 0.9736 26 1 0.4949 -4.5190 1.3076 27 1 1.6160 -6.9987 -1.2149 28 1 0.0166 -7.0785 -0.4380 29 1 -0.2909 -5.9093 -2.9905 30 1 -0.6291 -7.2767 -5.0985 31 1 -2.7112 -8.9814 -3.4872 32 1 -2.9510 -8.2952 -5.1823 33 1 -0.9521 -9.6243 -6.0030 34 1 -0.7117 -10.3103 -4.3081 35 1 1.8294 -3.7479 -2.1983 36 1 2.8281 -5.0934 -1.4960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086288141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:35 Heat of formation + Delta-G solvation = -9.474349 kcal Electronic energy + Delta-G solvation = -16386.209347 eV Core-core repulsion = 13677.888728 eV Total energy + Delta-G solvation = -2708.320618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06969 -39.98001 -37.14799 -35.96046 -34.94474 -32.09091 -29.09648 -26.44755 -25.96989 -24.80253 -23.30761 -22.89702 -21.17949 -19.80696 -19.32614 -18.36120 -17.19871 -16.68578 -16.46934 -16.00159 -15.79002 -15.44427 -15.07061 -14.64913 -14.52525 -13.79961 -13.51050 -13.30620 -12.95622 -12.92295 -12.65892 -12.43645 -12.13548 -12.05296 -11.61059 -11.54025 -11.48630 -11.41259 -11.04831 -10.90154 -10.72549 -10.07864 -9.00418 -7.95814 -5.24164 1.47872 1.48449 1.48739 1.58864 2.18070 2.55696 2.93535 3.37053 3.66876 3.72851 3.78262 3.84669 3.94165 4.00517 4.14402 4.25612 4.31582 4.39615 4.71110 4.73688 4.74547 4.91846 4.93124 4.98348 5.03596 5.10857 5.22926 5.28696 5.34687 5.49027 5.54673 5.65456 6.28093 6.54206 7.21705 7.33149 8.09874 8.32394 9.27693 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042906 B = 0.004036 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.438796 B = 6935.928814 C = 7268.961360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.060 0.940 12 C -0.135 4.135 13 C -0.101 4.101 14 H 0.082 0.918 15 C 0.139 3.861 16 N -0.714 5.714 17 C 0.533 3.467 18 O -0.591 6.591 19 C -0.204 4.204 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.153 4.153 23 H 0.251 0.749 24 H 0.374 0.626 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.413 0.587 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -15.425 -8.915 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.078 0.922 12 C -0.175 4.175 13 C -0.120 4.120 14 H 0.100 0.900 15 C 0.016 3.984 16 N -0.365 5.365 17 C 0.322 3.678 18 O -0.473 6.473 19 C -0.225 4.225 20 C -0.180 4.180 21 C -0.187 4.187 22 C -0.193 4.193 23 H 0.060 0.940 24 H 0.207 0.793 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.392 -15.962 -8.442 18.111 hybrid contribution -0.147 1.527 0.018 1.535 sum -1.539 -14.435 -8.424 16.784 Atomic orbital electron populations 1.69813 1.06568 1.26021 1.59556 1.25538 0.96371 1.01014 1.03713 0.85090 0.78276 0.79882 0.76609 1.19063 1.22046 1.22160 1.19715 0.91544 0.85188 1.40986 0.90558 1.42306 1.05332 1.00548 1.87614 1.21387 0.95086 0.84924 0.95281 0.92174 1.23353 1.00000 0.98674 0.95437 1.22486 0.98393 0.93563 0.97585 0.89973 1.21296 0.97694 0.95593 0.83866 1.45975 1.61399 1.08491 1.20616 1.20290 0.77700 0.82569 0.87277 1.90654 1.53493 1.39083 1.64025 1.22293 1.03137 1.01505 0.95555 1.23041 0.89431 1.01736 1.03831 1.23016 1.01112 0.92077 1.02484 1.23706 0.97240 0.99186 0.99180 0.94002 0.79338 0.87727 0.92353 0.91593 0.92144 0.75103 0.83441 0.89496 0.85096 0.85433 0.89551 0.93217 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -35.41 5.31 -320.44 -1.70 -37.11 16 10 C 0.14 5.44 4.56 45.52 0.21 5.65 16 11 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 12 C -0.14 -4.14 7.39 31.12 0.23 -3.91 16 13 C -0.10 -2.90 3.63 -10.27 -0.04 -2.93 16 14 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 15 C 0.14 3.58 5.51 86.38 0.48 4.06 16 16 N -0.71 -16.82 5.56 -463.07 -2.57 -19.39 16 17 C 0.53 13.67 7.61 87.66 0.67 14.34 16 18 O -0.59 -19.91 16.26 -3.02 -0.05 -19.96 16 19 C -0.20 -3.60 6.19 -11.54 -0.07 -3.67 16 20 C -0.14 -2.09 10.24 30.61 0.31 -1.77 16 21 C -0.15 -2.38 10.05 30.61 0.31 -2.07 16 22 C -0.15 -4.82 7.43 31.12 0.23 -4.59 16 23 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.37 19.70 7.90 -92.71 -0.73 18.97 16 25 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 1.74 7.85 -2.39 -0.02 1.72 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.41 8.19 8.47 -92.71 -0.79 7.41 16 30 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.75 7.67 -2.39 -0.02 1.74 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.48 7.90 -2.39 -0.02 2.46 16 Total: -1.00 -67.61 306.39 1.18 -66.43 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.44 Total: 31.62 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 3.63 Total: -11.05 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.99 Total: -114.55 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.61 1.18 -66.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086288141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.959 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds