Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46534 * 239.99647 * 3 2 1 5 5 H 1.48495 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 119.99889 * 3 2 1 7 7 C 1.38816 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99877 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99758 * 179.97438 * 9 7 2 11 11 C 1.53782 * 113.61087 * 155.00022 * 10 9 7 12 12 C 1.53781 * 87.08011 * 89.11522 * 11 10 9 13 13 C 1.53006 * 113.61135 * 139.98001 * 12 11 10 14 14 N 1.46498 * 109.46726 * 174.99850 * 13 12 11 15 15 C 1.34779 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99486 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00253 * 179.97438 * 15 14 13 18 18 C 1.53001 * 117.50007 * 248.62358 * 17 15 14 19 19 C 1.53006 * 117.49831 * 180.02562 * 17 15 14 20 20 C 1.53772 * 87.08372 * 25.43027 * 12 11 10 21 21 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00365 * 359.97438 * 9 7 2 23 23 H 1.08994 * 112.84774 * 23.80123 * 10 9 7 24 24 H 1.09000 * 113.61473 * 334.56551 * 11 10 9 25 25 H 1.09003 * 113.61070 * 203.66131 * 11 10 9 26 26 H 1.09000 * 113.61407 * 270.79254 * 12 11 10 27 27 H 1.08995 * 109.46794 * 294.99824 * 13 12 11 28 28 H 1.09000 * 109.47314 * 54.99958 * 13 12 11 29 29 H 0.96998 * 120.00310 * 359.97438 * 14 13 12 30 30 H 1.09003 * 115.54934 * 34.33109 * 17 15 14 31 31 H 1.09008 * 117.49743 * 359.97438 * 18 17 15 32 32 H 1.08994 * 117.50153 * 145.01911 * 18 17 15 33 33 H 1.08991 * 117.49703 * 214.97909 * 19 17 15 34 34 H 1.09000 * 117.49501 * 0.02562 * 19 17 15 35 35 H 1.09000 * 113.61922 * 89.11713 * 20 12 11 36 36 H 1.08999 * 113.61689 * 220.01658 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.2601 -4.8288 0.5960 12 6 0.7204 -5.0791 -0.8220 13 6 0.6195 -6.5617 -1.1866 14 7 -0.0124 -6.6993 -2.5011 15 6 -0.2063 -7.9234 -3.0307 16 8 0.1420 -8.9110 -2.4188 17 6 -0.8568 -8.0651 -4.3826 18 6 -2.2558 -8.6827 -4.4323 19 6 -1.0495 -9.4813 -4.9290 20 6 1.9989 -4.4022 -1.3433 21 1 -0.4850 0.8400 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 3.0655 -3.5639 0.4059 24 1 0.4937 -4.5189 1.3065 25 1 1.8869 -5.6367 0.9735 26 1 -0.1912 -4.5251 -1.0464 27 1 1.6181 -6.9973 -1.2160 28 1 0.0190 -7.0797 -0.4387 29 1 -0.2913 -5.9096 -2.9903 30 1 -0.6291 -7.2757 -5.0990 31 1 -2.7055 -8.9870 -3.4870 32 1 -2.9488 -8.2996 -5.1812 33 1 -0.9486 -9.6236 -6.0049 34 1 -0.7061 -10.3104 -4.3103 35 1 2.8278 -5.0934 -1.4960 36 1 1.8292 -3.7480 -2.1984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090888191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = 11.589140 kcal Electronic energy + Delta-G solvation = -16385.497299 eV Core-core repulsion = 13678.090062 eV Total energy + Delta-G solvation = -2707.407237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00394 -38.62221 -36.31664 -34.59552 -33.19524 -30.22277 -27.76686 -25.07395 -24.40625 -23.36951 -22.64082 -21.59511 -20.14466 -18.41908 -17.53791 -17.19766 -16.07308 -15.46343 -15.01948 -14.79989 -14.44535 -14.01786 -13.71155 -13.21769 -12.89793 -12.68447 -12.28543 -11.93561 -11.78188 -11.40864 -11.05867 -10.85811 -10.83391 -10.73060 -10.49202 -10.22256 -10.11761 -9.77013 -9.70421 -9.46286 -8.98581 -8.89052 -7.02095 -5.82485 -3.11602 2.45884 3.15474 3.41262 3.45797 3.46692 3.68288 4.53086 4.54281 4.62512 4.67782 4.94697 5.05558 5.09636 5.23519 5.35944 5.43685 5.53030 5.62105 5.69745 5.72657 5.86376 5.89837 5.95566 6.10278 6.20435 6.36184 6.43924 6.58536 6.73276 6.89151 7.03022 7.53819 7.66862 8.23089 8.36760 9.47342 10.04832 10.39171 11.39920 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042923 B = 0.004036 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.176657 B = 6936.289725 C = 7268.901013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.119 4.119 13 C 0.130 3.870 14 N -0.719 5.719 15 C 0.539 3.461 16 O -0.549 6.549 17 C -0.195 4.195 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.168 4.168 21 H 0.256 0.744 22 H 0.385 0.615 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.403 0.597 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -14.741 -7.821 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.188 4.188 12 C -0.138 4.138 13 C 0.007 3.993 14 N -0.370 5.370 15 C 0.325 3.675 16 O -0.427 6.427 17 C -0.216 4.216 18 C -0.191 4.191 19 C -0.187 4.187 20 C -0.209 4.209 21 H 0.066 0.934 22 H 0.219 0.781 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.927 -15.245 -7.336 17.027 hybrid contribution -0.025 1.407 -0.342 1.448 sum -1.951 -13.838 -7.678 15.945 Atomic orbital electron populations 1.69650 1.05148 1.25920 1.57392 1.24761 0.95536 0.97783 1.02730 0.86240 0.78522 0.83351 0.77909 1.21209 1.21668 1.21182 1.19255 0.91112 0.83996 1.43122 0.91033 1.42163 1.05669 0.99424 1.87168 1.21062 0.95118 0.85597 0.92763 1.23448 1.00504 0.99697 0.95133 1.22710 0.99574 0.92917 0.98619 1.21490 0.97565 0.97036 0.83177 1.46006 1.61843 1.08079 1.21035 1.19663 0.78359 0.83213 0.86264 1.90678 1.51599 1.37843 1.62615 1.22225 1.02193 1.00039 0.97162 1.22924 0.89732 1.02720 1.03699 1.22929 1.01034 0.93351 1.01361 1.23885 0.95667 0.99616 1.01753 0.93378 0.78116 0.91946 0.91316 0.90463 0.88883 0.91606 0.91907 0.76216 0.85823 0.88285 0.87790 0.88012 0.87486 0.91417 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.30 5.31 -52.63 -0.28 -17.58 16 10 C 0.17 3.24 4.56 -67.11 -0.31 2.94 16 11 C -0.15 -2.38 7.39 -25.92 -0.19 -2.57 16 12 C -0.12 -1.79 3.63 -89.81 -0.33 -2.11 16 13 C 0.13 1.79 5.51 -4.04 -0.02 1.76 16 14 N -0.72 -9.01 5.56 -60.29 -0.33 -9.34 16 15 C 0.54 7.22 7.61 -10.99 -0.08 7.14 16 16 O -0.55 -9.35 16.26 5.55 0.09 -9.26 16 17 C -0.20 -1.93 6.19 -91.77 -0.57 -2.49 16 18 C -0.15 -1.29 10.23 -26.75 -0.27 -1.56 16 19 C -0.15 -1.33 10.04 -26.75 -0.27 -1.60 16 20 C -0.17 -2.79 7.43 -25.92 -0.19 -2.98 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.38 9.96 7.90 -40.82 -0.32 9.63 16 23 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.40 4.35 8.47 -40.82 -0.35 4.01 16 30 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 35 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -31.32 306.38 -8.34 -39.66 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.65 Total: 10.57 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.48 Total: -8.73 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.11 Total: -53.87 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.32 -8.34 -39.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090888191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.245 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds