Wall clock time and date at job start Sun Mar 29 2020 22:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48505 * 109.46534 * 239.99647 * 3 2 1 5 5 H 1.48495 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 119.99889 * 3 2 1 7 7 C 1.38816 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99877 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99758 * 179.97438 * 9 7 2 11 11 C 1.53782 * 113.61087 * 155.00022 * 10 9 7 12 12 C 1.53781 * 87.08011 * 89.11522 * 11 10 9 13 13 C 1.53006 * 113.61135 * 139.98001 * 12 11 10 14 14 N 1.46498 * 109.46726 * 174.99850 * 13 12 11 15 15 C 1.34779 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99486 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00253 * 179.97438 * 15 14 13 18 18 C 1.53001 * 117.50007 * 248.62358 * 17 15 14 19 19 C 1.53006 * 117.49831 * 180.02562 * 17 15 14 20 20 C 1.53772 * 87.08372 * 25.43027 * 12 11 10 21 21 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00365 * 359.97438 * 9 7 2 23 23 H 1.08994 * 112.84774 * 23.80123 * 10 9 7 24 24 H 1.09000 * 113.61473 * 334.56551 * 11 10 9 25 25 H 1.09003 * 113.61070 * 203.66131 * 11 10 9 26 26 H 1.09000 * 113.61407 * 270.79254 * 12 11 10 27 27 H 1.08995 * 109.46794 * 294.99824 * 13 12 11 28 28 H 1.09000 * 109.47314 * 54.99958 * 13 12 11 29 29 H 0.96998 * 120.00310 * 359.97438 * 14 13 12 30 30 H 1.09003 * 115.54934 * 34.33109 * 17 15 14 31 31 H 1.09008 * 117.49743 * 359.97438 * 18 17 15 32 32 H 1.08994 * 117.50153 * 145.01911 * 18 17 15 33 33 H 1.08991 * 117.49703 * 214.97909 * 19 17 15 34 34 H 1.09000 * 117.49501 * 0.02562 * 19 17 15 35 35 H 1.09000 * 113.61922 * 89.11713 * 20 12 11 36 36 H 1.08999 * 113.61689 * 220.01658 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.2601 -4.8288 0.5960 12 6 0.7204 -5.0791 -0.8220 13 6 0.6195 -6.5617 -1.1866 14 7 -0.0124 -6.6993 -2.5011 15 6 -0.2063 -7.9234 -3.0307 16 8 0.1420 -8.9110 -2.4188 17 6 -0.8568 -8.0651 -4.3826 18 6 -2.2558 -8.6827 -4.4323 19 6 -1.0495 -9.4813 -4.9290 20 6 1.9989 -4.4022 -1.3433 21 1 -0.4850 0.8400 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 3.0655 -3.5639 0.4059 24 1 0.4937 -4.5189 1.3065 25 1 1.8869 -5.6367 0.9735 26 1 -0.1912 -4.5251 -1.0464 27 1 1.6181 -6.9973 -1.2160 28 1 0.0190 -7.0797 -0.4387 29 1 -0.2913 -5.9096 -2.9903 30 1 -0.6291 -7.2757 -5.0990 31 1 -2.7055 -8.9870 -3.4870 32 1 -2.9488 -8.2996 -5.1812 33 1 -0.9486 -9.6236 -6.0049 34 1 -0.7061 -10.3104 -4.3103 35 1 2.8278 -5.0934 -1.4960 36 1 1.8292 -3.7480 -2.1984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090888191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:28 Heat of formation + Delta-G solvation = -9.285841 kcal Electronic energy + Delta-G solvation = -16386.402506 eV Core-core repulsion = 13678.090062 eV Total energy + Delta-G solvation = -2708.312444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06951 -39.97974 -37.15203 -35.95825 -34.94237 -32.08951 -29.09535 -26.44704 -25.96517 -24.80181 -23.30348 -22.89689 -21.18020 -19.80572 -19.32228 -18.36107 -17.19818 -16.68371 -16.46946 -15.99872 -15.79521 -15.43877 -15.07306 -14.64201 -14.52598 -13.79754 -13.51091 -13.30324 -12.93231 -12.91789 -12.62264 -12.43523 -12.20063 -12.08102 -11.60587 -11.54307 -11.48281 -11.40884 -11.04642 -10.88975 -10.72134 -10.07862 -9.00296 -7.95294 -5.23737 1.47826 1.48514 1.50920 1.57072 2.18045 2.56148 2.93668 3.37175 3.66917 3.72975 3.78182 3.84553 3.94133 4.00755 4.14627 4.25594 4.31655 4.39609 4.71177 4.73644 4.74493 4.91774 4.93101 4.98275 5.03529 5.10828 5.22978 5.28688 5.34685 5.48762 5.54681 5.65368 6.28226 6.54191 7.21698 7.33361 8.10205 8.32870 9.27791 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042923 B = 0.004036 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.176657 B = 6936.289725 C = 7268.901013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 C -0.135 4.135 12 C -0.101 4.101 13 C 0.139 3.861 14 N -0.714 5.714 15 C 0.533 3.467 16 O -0.591 6.591 17 C -0.204 4.204 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.153 4.153 21 H 0.251 0.749 22 H 0.374 0.626 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.413 0.587 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -15.350 -8.910 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 C -0.175 4.175 12 C -0.120 4.120 13 C 0.015 3.985 14 N -0.365 5.365 15 C 0.322 3.678 16 O -0.473 6.473 17 C -0.225 4.225 18 C -0.180 4.180 19 C -0.187 4.187 20 C -0.193 4.193 21 H 0.060 0.940 22 H 0.207 0.793 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.476 -15.877 -8.438 18.041 hybrid contribution -0.114 1.511 0.019 1.515 sum -1.590 -14.366 -8.420 16.728 Atomic orbital electron populations 1.69802 1.06567 1.26179 1.59376 1.25541 0.96366 1.01021 1.03625 0.85223 0.77209 0.79216 0.78179 1.20382 1.22210 1.20477 1.19648 0.91545 0.85231 1.41338 0.90588 1.42289 1.05312 1.00522 1.87661 1.21390 0.95083 0.84933 0.95272 1.23356 0.99992 0.98675 0.95442 1.22486 0.98385 0.93563 0.97591 1.21299 0.97693 0.95595 0.83866 1.45974 1.61374 1.08506 1.20620 1.20292 0.77709 0.82567 0.87270 1.90657 1.53470 1.39091 1.64049 1.22293 1.03162 1.01475 0.95573 1.23030 0.89456 1.01720 1.03827 1.23005 1.01107 0.92087 1.02478 1.23704 0.97242 0.99186 0.99174 0.93983 0.79344 0.92191 0.92351 0.87721 0.89958 0.91596 0.92141 0.75103 0.83438 0.89500 0.85095 0.85430 0.89553 0.89132 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.47 9.97 84.03 0.84 -12.63 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.47 5.31 -320.43 -1.70 -37.17 16 10 C 0.14 5.45 4.56 45.52 0.21 5.66 16 11 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 12 C -0.10 -2.90 3.63 -10.27 -0.04 -2.94 16 13 C 0.14 3.59 5.51 86.38 0.48 4.06 16 14 N -0.71 -16.84 5.56 -463.05 -2.57 -19.41 16 15 C 0.53 13.68 7.61 87.66 0.67 14.35 16 16 O -0.59 -19.93 16.26 -3.05 -0.05 -19.98 16 17 C -0.20 -3.60 6.19 -11.54 -0.07 -3.68 16 18 C -0.14 -2.09 10.23 30.58 0.31 -1.78 16 19 C -0.15 -2.38 10.04 30.58 0.31 -2.07 16 20 C -0.15 -4.84 7.43 31.12 0.23 -4.60 16 21 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 22 H 0.37 19.72 7.90 -92.71 -0.73 18.99 16 23 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 29 H 0.41 8.21 8.47 -92.71 -0.79 7.42 16 30 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 35 H 0.09 2.48 7.90 -2.39 -0.02 2.46 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.57 306.38 1.17 -66.39 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.44 Total: 31.96 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 3.63 Total: -11.21 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -3.99 Total: -114.64 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -67.57 1.17 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090888191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.107 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds