Wall clock time and date at job start Sun Mar 29 2020 22:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 H 1.07995 * 120.00167 * 239.72222 * 4 2 1 6 6 C 1.37879 * 119.99394 * 59.99920 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00056 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 O 1.45200 * 109.47228 * 120.00106 * 2 1 3 13 13 C 1.34228 * 117.00208 * 269.99754 * 12 2 1 14 14 O 1.20821 * 119.99893 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00180 * 179.97438 * 13 12 2 16 16 C 1.53001 * 109.47352 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.63598 * 305.42673 * 16 15 13 18 18 C 1.53020 * 109.63861 * 66.05591 * 16 15 13 19 19 C 1.50073 * 110.14736 * 169.12383 * 18 16 15 20 20 C 1.29443 * 124.06903 * 342.86638 * 19 18 16 21 21 C 1.50067 * 124.07838 * 0.47000 * 20 19 18 22 22 C 1.53015 * 110.14808 * 342.87146 * 21 20 19 23 23 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47497 * 299.99624 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.46979 * 300.00761 * 15 13 12 28 28 H 1.09002 * 109.46776 * 60.00129 * 15 13 12 29 29 H 1.09008 * 109.36122 * 289.32894 * 18 16 15 30 30 H 1.09005 * 109.35968 * 48.91466 * 18 16 15 31 31 H 1.07996 * 117.96398 * 162.84924 * 19 18 16 32 32 H 1.08004 * 117.95568 * 180.49085 * 20 19 18 33 33 H 1.08995 * 109.35550 * 222.65637 * 21 20 19 34 34 H 1.09009 * 109.35108 * 103.07737 * 21 20 19 35 35 H 1.09007 * 109.64149 * 289.74805 * 22 21 20 36 36 H 1.08996 * 109.81874 * 169.22546 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6569 -1.5859 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.3426 -2.1616 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9974 1.2516 2.2506 15 6 2.7183 -0.5773 3.5495 16 6 2.8625 0.4887 4.6375 17 1 3.4958 1.2985 4.2752 18 6 1.4822 1.0356 5.0078 19 6 1.5756 1.8799 6.2450 20 6 2.5754 1.8540 7.0668 21 6 3.7853 0.9836 6.8919 22 6 3.4895 -0.1351 5.8907 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7094 1.1619 -3.4843 27 1 2.0088 -1.3371 3.8773 28 1 3.6872 -1.0410 3.3639 29 1 1.1007 1.6408 4.1854 30 1 0.8007 0.2042 5.1883 31 1 0.7580 2.5509 6.4630 32 1 2.5362 2.4988 7.9323 33 1 4.0575 0.5462 7.8524 34 1 4.6148 1.5877 6.5242 35 1 2.7932 -0.8478 6.3327 36 1 4.4147 -0.6451 5.6224 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122620415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:28 Heat of formation + Delta-G solvation = -99.850094 kcal Electronic energy + Delta-G solvation = -16981.968509 eV Core-core repulsion = 14237.436153 eV Total energy + Delta-G solvation = -2744.532356 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80565 -38.28758 -35.66309 -33.24778 -32.69150 -30.72683 -29.64132 -27.33850 -25.30084 -23.30194 -22.20915 -20.76246 -19.38379 -17.93897 -16.82071 -16.57959 -15.88974 -15.32127 -15.18325 -14.53241 -14.22614 -13.54675 -13.31637 -12.77107 -12.71170 -12.41312 -12.23116 -11.93319 -11.75254 -11.48777 -11.17807 -11.02851 -10.79479 -10.65275 -10.52614 -10.35789 -10.26836 -10.10940 -9.50858 -9.43690 -8.91756 -8.87963 -8.47772 -6.17152 -4.23967 2.33331 3.07457 3.25331 3.30646 3.34568 3.73621 4.34764 4.67268 4.74127 4.93670 5.15743 5.22772 5.22952 5.36979 5.51390 5.56114 5.72082 5.77726 5.82975 5.85563 5.94437 6.03058 6.19148 6.34750 6.48328 6.67139 6.69397 6.90367 6.94065 7.00615 7.22450 7.62274 7.75553 7.97622 8.17076 8.68328 8.92573 9.41638 10.90291 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.055923 B = 0.004771 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.564310 B = 5867.408716 C = 6125.067358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.359 6.359 13 C 0.450 3.550 14 O -0.521 6.521 15 C -0.113 4.113 16 C -0.074 4.074 17 H 0.082 0.918 18 C -0.096 4.096 19 C -0.141 4.141 20 C -0.171 4.171 21 C -0.087 4.087 22 C -0.115 4.115 23 H 0.098 0.902 24 H 0.036 0.964 25 H 0.015 0.985 26 H 0.266 0.734 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -1.564 15.850 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.276 6.276 13 C 0.293 3.707 14 O -0.411 6.411 15 C -0.151 4.151 16 C -0.093 4.093 17 H 0.100 0.900 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.189 4.189 21 C -0.124 4.124 22 C -0.153 4.153 23 H 0.117 0.883 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.986 -1.095 15.639 15.959 hybrid contribution 0.101 -0.188 -0.850 0.876 sum 3.087 -1.283 14.789 15.162 Atomic orbital electron populations 1.22149 0.97643 1.00026 1.01343 1.20603 0.91336 0.93897 0.77955 0.93617 1.21044 1.32291 1.13570 0.88988 0.91362 1.24890 0.94974 0.95067 0.99067 1.69902 1.36199 1.22515 1.24128 0.86280 0.79297 0.79139 0.81449 1.20360 1.20977 1.19635 1.86483 1.75787 1.43792 1.21498 1.23401 0.74948 0.86094 0.86239 1.90560 1.48841 1.17015 1.84685 1.21446 1.03530 0.99319 0.90771 1.21015 0.97658 0.97278 0.93331 0.89978 1.20679 0.96863 0.99233 0.96542 1.22121 0.98393 0.99332 0.96028 1.21977 0.96340 1.00915 0.99662 1.20397 0.96549 0.96319 0.99178 1.21663 1.00823 0.97556 0.95233 0.88327 0.94509 0.96553 0.92432 0.88435 0.88246 0.88920 0.91234 0.88244 0.88418 0.91362 0.91047 0.91648 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.33 37.16 0.35 -3.60 16 2 C 0.21 5.83 2.56 -27.88 -0.07 5.76 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.36 -8.62 9.86 -39.25 -0.39 -9.01 16 13 C 0.45 9.26 7.69 36.01 0.28 9.54 16 14 O -0.52 -11.99 13.32 -18.75 -0.25 -12.24 16 15 C -0.11 -1.63 5.28 -27.88 -0.15 -1.77 16 16 C -0.07 -0.99 1.87 -90.41 -0.17 -1.15 16 17 H 0.08 1.23 7.93 -51.93 -0.41 0.81 16 18 C -0.10 -1.33 5.05 -28.18 -0.14 -1.47 16 19 C -0.14 -1.71 9.80 -35.90 -0.35 -2.06 16 20 C -0.17 -1.86 9.80 -35.90 -0.35 -2.21 16 21 C -0.09 -0.85 6.12 -28.18 -0.17 -1.03 16 22 C -0.12 -1.19 5.31 -26.52 -0.14 -1.33 16 23 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.54 6.31 -51.92 -0.33 1.21 16 30 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 31 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.10 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.39 295.21 -7.52 -37.91 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.61 Total: 0.39 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.32 Total: -12.80 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.63 Total: -24.87 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.64 Total: -21.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.39 -7.52 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122620415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.945 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds