Wall clock time and date at job start Sun Mar 29 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 O 1.45199 * 109.46751 * 64.99968 * 3 2 1 14 14 C 1.34232 * 117.00382 * 270.00064 * 13 3 2 15 15 O 1.20822 * 119.99547 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00217 * 180.02562 * 14 13 3 17 17 C 1.53005 * 115.55021 * 179.91299 * 16 14 13 18 18 C 1.52998 * 117.49564 * 34.32846 * 17 16 14 19 19 C 1.53000 * 117.49671 * 325.66868 * 17 16 14 20 20 C 1.52999 * 117.50128 * 34.20125 * 16 14 13 21 21 C 1.52995 * 60.00163 * 252.51125 * 20 16 14 22 22 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 24 24 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 25 25 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 26 26 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 28 28 H 1.09002 * 115.54562 * 179.97438 * 17 16 14 29 29 H 1.08994 * 117.50032 * 0.02562 * 18 17 16 30 30 H 1.09006 * 117.49476 * 145.02327 * 18 17 16 31 31 H 1.08990 * 117.49500 * 214.97999 * 19 17 16 32 32 H 1.09001 * 117.49538 * 359.97438 * 19 17 16 33 33 H 1.09004 * 117.49474 * 0.02562 * 20 16 14 34 34 H 1.09000 * 117.50133 * 145.01815 * 20 16 14 35 35 H 1.08999 * 117.49720 * 252.50704 * 21 20 16 36 36 H 1.09004 * 117.49907 * 107.48797 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 8 1.6558 2.0916 1.2407 14 6 0.4726 2.7254 1.2561 15 8 -0.2193 2.7369 0.2657 16 6 0.0074 3.4224 2.5085 17 6 -1.3544 4.1134 2.4121 18 6 -2.4194 3.4557 1.5324 19 6 -1.7333 4.7437 1.0705 20 6 1.0726 4.0793 3.3887 21 6 0.3863 2.7921 3.8501 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 3.8296 -0.0660 -2.9471 28 1 -1.6910 4.6172 3.3182 29 1 -2.1502 2.5307 1.0227 30 1 -3.4568 3.5276 1.8594 31 1 -2.3194 5.6623 1.0938 32 1 -1.0122 4.6666 0.2567 33 1 2.1099 4.0075 3.0616 34 1 0.8035 5.0040 3.8992 35 1 -0.3343 2.8699 4.6642 36 1 0.9721 1.8731 3.8268 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122884565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:46 Heat of formation + Delta-G solvation = -58.655893 kcal Electronic energy + Delta-G solvation = -17768.839955 eV Core-core repulsion = 15026.093914 eV Total energy + Delta-G solvation = -2742.746041 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75526 -39.10780 -37.39976 -36.23696 -35.26081 -33.34395 -29.39669 -26.29031 -25.15160 -23.66897 -23.60908 -22.90390 -21.83281 -20.55071 -18.69101 -18.23204 -17.17709 -16.96629 -16.53136 -16.40783 -15.41860 -14.86393 -14.77931 -14.28455 -13.99052 -13.49014 -13.39662 -13.18736 -13.15706 -12.87083 -12.59990 -12.57093 -12.28235 -12.15865 -12.10607 -11.77855 -11.72608 -11.39830 -11.16611 -10.82825 -10.76536 -10.51872 -10.39927 -8.29628 -6.46782 1.29012 1.39491 1.41494 1.52540 2.02323 2.40520 2.63862 2.99768 3.26388 3.43139 3.60335 3.99804 4.09907 4.23815 4.33272 4.34905 4.36588 4.38770 4.54125 4.75254 4.79090 4.86281 4.87557 4.98903 5.04095 5.08767 5.18931 5.25289 5.25758 5.42520 5.43693 5.52401 5.65248 5.98162 6.16176 6.59131 7.05497 7.26619 8.77060 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.007209 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.684244 B = 3883.181743 C = 4223.820898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.229 3.771 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.064 0.936 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.266 1.266 13 O -0.364 6.364 14 C 0.473 3.527 15 O -0.532 6.532 16 C -0.139 4.139 17 C -0.098 4.098 18 C -0.176 4.176 19 C -0.180 4.180 20 C -0.133 4.133 21 C -0.128 4.128 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.154 0.846 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 5.868 11.747 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.280 6.280 14 C 0.318 3.682 15 O -0.423 6.423 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.213 4.213 19 C -0.217 4.217 20 C -0.170 4.170 21 C -0.165 4.165 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.172 0.828 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.305 5.744 11.245 14.588 hybrid contribution 0.859 -0.324 -1.062 1.404 sum -6.446 5.420 10.184 13.215 Atomic orbital electron populations 1.21685 0.96294 1.00447 0.99985 1.21855 0.94428 0.98175 1.02198 1.20293 0.94381 0.89129 0.78596 0.97988 1.21331 0.90595 1.39883 1.06996 0.91751 1.25814 1.04280 0.93862 0.94309 1.70017 1.37450 1.37787 1.09989 0.85218 0.77668 0.79146 0.77615 1.19107 1.20257 1.19044 1.86412 1.36082 1.63135 1.42404 1.23138 0.79381 0.75949 0.89694 1.90538 1.55448 1.59199 1.37125 1.20713 0.98287 1.06554 0.88468 1.21592 0.90632 1.02819 0.96479 1.23025 0.97571 0.97160 1.03515 1.23006 1.03820 0.97374 0.97478 1.23194 0.95933 0.98643 0.99254 1.23196 1.02744 0.97489 0.93071 0.92106 0.94487 0.94732 0.89615 0.93728 0.92037 0.82842 0.90982 0.86665 0.86734 0.91415 0.89320 0.84157 0.84031 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.57 71.98 0.62 -5.13 16 2 C -0.13 -6.64 5.49 30.60 0.17 -6.47 16 3 C 0.23 12.77 2.25 29.85 0.07 12.83 16 4 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 5 C -0.55 -31.80 8.90 25.60 0.23 -31.57 16 6 H 0.06 3.65 7.81 -2.92 -0.02 3.63 16 7 C 0.02 0.96 5.30 84.66 0.45 1.40 16 8 N -0.91 -53.12 11.28 21.45 0.24 -52.88 16 9 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 O -0.36 -17.84 9.27 -51.44 -0.48 -18.31 16 14 C 0.47 20.38 5.79 71.23 0.41 20.79 16 15 O -0.53 -25.28 8.98 21.98 0.20 -25.09 16 16 C -0.14 -4.25 2.47 -52.93 -0.13 -4.38 16 17 C -0.10 -2.47 5.85 -10.79 -0.06 -2.53 16 18 C -0.18 -4.97 9.66 30.62 0.30 -4.67 16 19 C -0.18 -5.18 9.66 30.62 0.30 -4.89 16 20 C -0.13 -3.26 9.81 30.59 0.30 -2.96 16 21 C -0.13 -3.05 9.81 30.59 0.30 -2.75 16 22 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.04 1.61 6.06 -2.39 -0.01 1.60 16 24 H 0.03 1.66 7.80 -2.39 -0.02 1.64 16 25 H 0.09 4.83 5.94 -2.39 -0.01 4.81 16 26 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.07 2.60 6.28 -2.39 -0.02 2.58 16 30 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.53 6.29 -2.39 -0.02 2.52 16 33 H 0.09 2.56 8.07 -2.38 -0.02 2.55 16 34 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 Total: -1.00 -67.12 292.70 5.99 -61.13 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.06 Total: 20.07 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 2.94 Total: -30.33 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.24 Total: -52.88 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.28 Total: -43.40 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.12 5.99 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122884565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.477 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds