Wall clock time and date at job start Sun Mar 29 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99754 * 2 1 4 4 C 1.52992 * 109.47511 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.46524 * 239.99915 * 3 2 1 6 6 C 1.50695 * 109.47295 * 120.00130 * 3 2 1 7 7 O 1.20821 * 120.00222 * 359.97438 * 6 3 2 8 8 O 1.34232 * 120.00249 * 179.97438 * 6 3 2 9 9 C 1.45200 * 117.00499 * 179.97438 * 8 6 3 10 10 H 1.09000 * 109.46293 * 30.00576 * 9 8 6 11 11 C 1.50696 * 109.46946 * 150.00202 * 9 8 6 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 C 1.53001 * 109.47141 * 270.00686 * 9 8 6 20 20 C 1.52998 * 117.49883 * 128.74740 * 19 9 8 21 21 C 1.52992 * 117.50066 * 60.08595 * 19 9 8 22 22 H 1.07999 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.99801 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99997 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47584 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47457 * 300.00762 * 4 3 2 27 27 H 1.09008 * 109.47199 * 60.00223 * 4 3 2 28 28 H 1.09001 * 109.47000 * 299.99461 * 5 3 2 29 29 H 1.08995 * 109.47473 * 60.00345 * 5 3 2 30 30 H 1.09008 * 109.46744 * 180.02562 * 5 3 2 31 31 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 32 32 H 1.08999 * 115.54378 * 274.40712 * 19 9 8 33 33 H 1.09003 * 117.49932 * 359.97438 * 20 19 9 34 34 H 1.08994 * 117.50378 * 145.01599 * 20 19 9 35 35 H 1.09000 * 117.50086 * 214.97634 * 21 19 9 36 36 H 1.09002 * 117.50188 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.9347 0.4757 2.0260 8 8 3.6963 2.4664 1.4426 9 6 4.5047 2.4752 2.6487 10 1 4.7745 1.4526 2.9125 11 6 5.7565 3.2791 2.4085 12 1 5.9273 3.7378 1.4458 13 6 6.6839 3.4289 3.4178 14 7 6.4784 2.8656 4.5884 15 14 8.2359 4.4247 3.1198 16 1 7.8687 5.8180 2.7604 17 1 9.0626 4.4338 4.3535 18 1 9.0100 3.8145 2.0091 19 6 3.7067 3.1036 3.7929 20 6 3.6185 2.3220 5.1053 21 6 2.3938 2.4276 4.1931 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6142 3.4120 -0.0011 26 1 0.4429 2.4101 -0.8908 27 1 0.4423 2.4105 0.8892 28 1 3.6514 0.5576 -1.2492 29 1 2.3165 1.3283 -2.1393 30 1 3.4884 2.3299 -1.2491 31 1 5.6726 2.3483 4.7430 32 1 3.7530 4.1907 3.8567 33 1 4.1287 1.3600 5.1533 34 1 3.6064 2.8949 6.0324 35 1 1.5764 3.0700 4.5207 36 1 2.0983 1.5355 3.6410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123365190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:04 Heat of formation + Delta-G solvation = -51.824472 kcal Electronic energy + Delta-G solvation = -17784.405111 eV Core-core repulsion = 15041.955303 eV Total energy + Delta-G solvation = -2742.449808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11874 -37.42807 -35.97913 -35.06534 -32.70733 -30.85692 -27.50725 -27.30636 -24.14995 -23.13611 -21.68326 -21.22995 -19.53457 -18.31666 -17.22509 -16.73423 -16.06450 -15.55166 -14.75541 -14.29843 -13.92758 -13.76928 -13.27194 -12.87435 -12.45805 -12.33911 -12.15029 -11.82466 -11.74380 -11.45883 -11.09505 -10.89018 -10.75087 -10.72440 -10.59342 -10.14821 -9.73917 -9.61517 -9.54167 -9.36986 -9.19616 -8.58031 -8.39793 -6.42838 -4.22309 2.25000 2.91606 3.39659 3.42000 3.60074 3.65177 4.46584 4.65564 4.72394 4.94620 5.07623 5.23591 5.39984 5.46095 5.64559 5.70495 5.72153 5.86006 5.86954 5.89935 5.95942 6.06196 6.25434 6.29666 6.34877 6.39878 6.62912 6.67142 6.77022 6.90166 6.96406 7.16628 7.50142 7.95890 8.29630 8.64815 8.81349 9.50912 10.94871 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.007659 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.935298 B = 3654.761471 C = 4196.306614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.032 4.032 4 C -0.141 4.141 5 C -0.136 4.136 6 C 0.464 3.536 7 O -0.518 6.518 8 O -0.340 6.340 9 C 0.239 3.761 10 H 0.036 0.964 11 C -0.608 4.608 12 H 0.063 0.937 13 C 0.029 3.971 14 N -0.906 5.906 15 Si 1.076 2.924 16 H -0.286 1.286 17 H -0.281 1.281 18 H -0.286 1.286 19 C -0.139 4.139 20 C -0.156 4.156 21 C -0.211 4.211 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.284 0.716 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 -1.533 -8.345 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.141 4.141 3 C -0.033 4.033 4 C -0.198 4.198 5 C -0.193 4.193 6 C 0.307 3.693 7 O -0.408 6.408 8 O -0.256 6.256 9 C 0.186 3.814 10 H 0.054 0.946 11 C -0.646 4.646 12 H 0.081 0.919 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.903 3.097 16 H -0.212 1.212 17 H -0.206 1.206 18 H -0.212 1.212 19 C -0.158 4.158 20 C -0.193 4.193 21 C -0.248 4.248 22 H 0.122 0.878 23 H 0.117 0.883 24 H 0.132 0.868 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.154 -1.256 -7.339 11.042 hybrid contribution -1.444 -0.652 -0.423 1.640 sum -9.598 -1.908 -7.762 12.491 Atomic orbital electron populations 1.23939 0.95769 1.02145 1.01405 1.22590 0.95708 0.96739 0.99045 1.19564 0.94970 0.95707 0.93048 1.21905 0.98351 0.97283 1.02296 1.21784 0.99053 1.03666 0.94772 1.23209 0.78717 0.80913 0.86457 1.90553 1.64329 1.39271 1.46644 1.86498 1.52404 1.40331 1.46318 1.20272 0.86858 0.97241 0.77003 0.94636 1.21808 1.03360 1.37280 1.02126 0.91871 1.25823 1.02109 0.97483 0.92345 1.70743 1.30128 1.30360 1.23045 0.83454 0.74762 0.75622 0.75855 1.21215 1.20598 1.21248 1.23084 0.97033 0.98874 0.96859 1.22688 1.00586 1.01909 0.94147 1.23239 0.91931 1.03719 1.05914 0.87825 0.88288 0.86841 0.90711 0.91286 0.91988 0.92074 0.91477 0.90591 0.90152 0.88464 0.89217 0.89608 0.90425 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.31 13.70 29.01 0.40 -1.91 16 2 C -0.12 -1.73 8.00 -36.03 -0.29 -2.02 16 3 C -0.03 -0.49 0.93 -156.82 -0.15 -0.64 16 4 C -0.14 -1.87 7.06 37.15 0.26 -1.60 16 5 C -0.14 -1.84 8.39 37.16 0.31 -1.53 16 6 C 0.46 9.69 5.77 36.00 0.21 9.90 16 7 O -0.52 -12.08 13.08 -18.75 -0.25 -12.32 16 8 O -0.34 -8.06 9.65 -39.26 -0.38 -8.44 16 9 C 0.24 6.37 2.00 -27.88 -0.06 6.32 16 10 H 0.04 1.05 6.77 -51.93 -0.35 0.70 16 11 C -0.61 -17.32 8.88 -34.44 -0.31 -17.62 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.03 0.81 5.30 -17.82 -0.09 0.72 16 14 N -0.91 -26.81 13.38 55.43 0.74 -26.07 16 15 Si 1.08 24.74 29.90 -169.99 -5.08 19.66 16 16 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.14 -3.42 4.47 -90.62 -0.41 -3.82 16 20 C -0.16 -3.55 8.15 -26.70 -0.22 -3.76 16 21 C -0.21 -4.51 9.80 -26.70 -0.26 -4.77 16 22 H 0.10 1.11 5.69 -52.49 -0.30 0.81 16 23 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 24 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 25 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 26 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 27 H 0.06 0.83 7.50 -51.92 -0.39 0.44 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.08 8.11 -51.92 -0.42 0.66 16 31 H 0.28 8.20 3.56 -40.82 -0.15 8.06 16 32 H 0.10 2.46 8.11 -51.93 -0.42 2.04 16 33 H 0.09 2.14 7.42 -51.93 -0.39 1.76 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.10 2.17 5.37 -51.93 -0.28 1.89 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -31.32 294.43 -6.37 -37.69 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.24 Total: 5.78 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.60 Total: -20.74 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.62 Total: -20.76 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.32 -6.37 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123365190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.131 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds