Wall clock time and date at job start Sun Mar 29 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99754 * 2 1 4 4 C 1.52992 * 109.47511 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.46524 * 239.99915 * 3 2 1 6 6 C 1.50695 * 109.47295 * 120.00130 * 3 2 1 7 7 O 1.20821 * 120.00222 * 359.97438 * 6 3 2 8 8 O 1.34232 * 120.00249 * 179.97438 * 6 3 2 9 9 C 1.45200 * 117.00499 * 179.97438 * 8 6 3 10 10 H 1.09000 * 109.46293 * 30.00576 * 9 8 6 11 11 C 1.50696 * 109.46946 * 150.00202 * 9 8 6 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 C 1.53001 * 109.47141 * 270.00686 * 9 8 6 20 20 C 1.52998 * 117.49883 * 128.74740 * 19 9 8 21 21 C 1.52992 * 117.50066 * 60.08595 * 19 9 8 22 22 H 1.07999 * 119.99997 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.99801 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.99997 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47584 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47457 * 300.00762 * 4 3 2 27 27 H 1.09008 * 109.47199 * 60.00223 * 4 3 2 28 28 H 1.09001 * 109.47000 * 299.99461 * 5 3 2 29 29 H 1.08995 * 109.47473 * 60.00345 * 5 3 2 30 30 H 1.09008 * 109.46744 * 180.02562 * 5 3 2 31 31 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 32 32 H 1.08999 * 115.54378 * 274.40712 * 19 9 8 33 33 H 1.09003 * 117.49932 * 359.97438 * 20 19 9 34 34 H 1.08994 * 117.50378 * 145.01599 * 20 19 9 35 35 H 1.09000 * 117.50086 * 214.97634 * 21 19 9 36 36 H 1.09002 * 117.50188 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 2.9347 0.4757 2.0260 8 8 3.6963 2.4664 1.4426 9 6 4.5047 2.4752 2.6487 10 1 4.7745 1.4526 2.9125 11 6 5.7565 3.2791 2.4085 12 1 5.9273 3.7378 1.4458 13 6 6.6839 3.4289 3.4178 14 7 6.4784 2.8656 4.5884 15 14 8.2359 4.4247 3.1198 16 1 7.8687 5.8180 2.7604 17 1 9.0626 4.4338 4.3535 18 1 9.0100 3.8145 2.0091 19 6 3.7067 3.1036 3.7929 20 6 3.6185 2.3220 5.1053 21 6 2.3938 2.4276 4.1931 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6142 3.4120 -0.0011 26 1 0.4429 2.4101 -0.8908 27 1 0.4423 2.4105 0.8892 28 1 3.6514 0.5576 -1.2492 29 1 2.3165 1.3283 -2.1393 30 1 3.4884 2.3299 -1.2491 31 1 5.6726 2.3483 4.7430 32 1 3.7530 4.1907 3.8567 33 1 4.1287 1.3600 5.1533 34 1 3.6064 2.8949 6.0324 35 1 1.5764 3.0700 4.5207 36 1 2.0983 1.5355 3.6410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123365190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:04 Heat of formation + Delta-G solvation = -68.874593 kcal Electronic energy + Delta-G solvation = -17785.144460 eV Core-core repulsion = 15041.955303 eV Total energy + Delta-G solvation = -2743.189157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79922 -39.08989 -37.46420 -36.88116 -34.82513 -31.94026 -29.53016 -28.37328 -25.74080 -24.96939 -23.50006 -22.71743 -21.43909 -19.75058 -19.14338 -18.38597 -17.52134 -17.28691 -16.16749 -15.97517 -15.57765 -15.30539 -14.86047 -14.51525 -14.47462 -13.63153 -13.40155 -13.27913 -13.11462 -12.80420 -12.72457 -12.62866 -12.48495 -12.21050 -11.92726 -11.73240 -11.60108 -11.48933 -11.26390 -11.09199 -10.68315 -10.50214 -10.39155 -8.67658 -6.49658 1.16663 1.27030 1.53626 1.61793 1.82245 2.06544 2.56111 2.91401 3.08603 3.52227 3.75550 3.82796 3.92042 3.99575 4.01722 4.11465 4.38381 4.40512 4.58192 4.67890 4.72118 4.78362 4.79158 4.84802 4.97047 4.97625 5.10966 5.17551 5.21709 5.26849 5.52712 5.65281 5.75573 5.91550 6.12507 6.49605 6.92179 7.33595 8.71740 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.007659 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.935298 B = 3654.761471 C = 4196.306614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 C -0.026 4.026 4 C -0.138 4.138 5 C -0.134 4.134 6 C 0.455 3.545 7 O -0.548 6.548 8 O -0.349 6.349 9 C 0.242 3.758 10 H -0.005 1.005 11 C -0.630 4.630 12 H 0.058 0.942 13 C -0.015 4.015 14 N -0.930 5.930 15 Si 1.122 2.878 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.271 1.271 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.179 4.179 22 H 0.121 0.879 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.279 0.721 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -0.774 -9.466 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.027 4.027 4 C -0.195 4.195 5 C -0.191 4.191 6 C 0.300 3.700 7 O -0.439 6.439 8 O -0.265 6.265 9 C 0.188 3.812 10 H 0.012 0.988 11 C -0.668 4.668 12 H 0.076 0.924 13 C -0.216 4.216 14 N -0.567 5.567 15 Si 0.942 3.058 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.177 4.177 20 C -0.192 4.192 21 C -0.216 4.216 22 H 0.139 0.861 23 H 0.137 0.863 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.859 -0.509 -8.482 13.016 hybrid contribution -1.019 -0.986 -0.108 1.422 sum -10.878 -1.494 -8.590 13.941 Atomic orbital electron populations 1.24245 0.94791 1.03927 0.97244 1.22486 0.96576 0.95532 1.02834 1.19741 0.94755 0.97747 0.90436 1.21950 0.97969 0.95520 1.04095 1.21821 0.99237 1.02550 0.95466 1.24539 0.78171 0.79437 0.87873 1.90526 1.65209 1.39960 1.48245 1.86493 1.52819 1.41982 1.45214 1.19915 0.87681 0.94678 0.78891 0.98755 1.22139 1.04845 1.37603 1.02174 0.92390 1.27335 1.04937 0.97658 0.91655 1.70824 1.30376 1.31459 1.23995 0.82887 0.71358 0.75311 0.76205 1.19082 1.20481 1.19676 1.22810 0.99600 0.98250 0.97088 1.22664 1.01345 1.00864 0.94374 1.23237 0.91605 1.02989 1.03737 0.86129 0.86297 0.87967 0.91737 0.87438 0.92107 0.93142 0.87708 0.91774 0.90758 0.89366 0.91231 0.87802 0.86871 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 13.70 67.78 0.93 -2.40 16 2 C -0.16 -4.14 8.00 25.64 0.21 -3.93 16 3 C -0.03 -0.77 0.93 -53.68 -0.05 -0.82 16 4 C -0.14 -3.30 7.06 71.98 0.51 -2.79 16 5 C -0.13 -3.48 8.39 71.98 0.60 -2.87 16 6 C 0.45 19.37 5.77 71.23 0.41 19.78 16 7 O -0.55 -26.42 13.08 21.98 0.29 -26.13 16 8 O -0.35 -17.07 9.65 -51.43 -0.50 -17.57 16 9 C 0.24 13.40 2.00 29.85 0.06 13.46 16 10 H -0.01 -0.32 6.77 -2.39 -0.02 -0.34 16 11 C -0.63 -36.95 8.88 25.60 0.23 -36.72 16 12 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 13 C -0.01 -0.85 5.30 84.66 0.45 -0.40 16 14 N -0.93 -56.21 13.38 21.45 0.29 -55.92 16 15 Si 1.12 49.76 29.90 68.60 2.05 51.81 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C -0.16 -7.91 4.47 -10.80 -0.05 -7.96 16 20 C -0.16 -7.14 8.15 30.62 0.25 -6.89 16 21 C -0.18 -7.52 9.80 30.62 0.30 -7.22 16 22 H 0.12 2.02 5.69 -2.91 -0.02 2.01 16 23 H 0.12 1.94 8.06 -2.91 -0.02 1.91 16 24 H 0.10 2.89 8.06 -2.91 -0.02 2.87 16 25 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 26 H 0.11 1.74 7.50 -2.39 -0.02 1.72 16 27 H 0.06 1.46 7.50 -2.38 -0.02 1.44 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.80 8.11 -2.38 -0.02 1.78 16 31 H 0.28 16.66 3.56 -92.71 -0.33 16.33 16 32 H 0.09 4.53 8.11 -2.39 -0.02 4.51 16 33 H 0.07 3.46 7.42 -2.39 -0.02 3.44 16 34 H 0.10 4.34 8.14 -2.39 -0.02 4.32 16 35 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.09 3.91 5.37 -2.39 -0.01 3.89 16 Total: -1.00 -70.26 294.43 7.46 -62.80 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 1.49 Total: 23.79 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.84 Total: -38.78 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.29 Total: -55.92 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.21 Total: -43.70 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -70.26 7.46 -62.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123365190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.074 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds