Wall clock time and date at job start Sun Mar 29 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 120.00077 * 2 1 4 4 C 1.53000 * 109.47444 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.47118 * 240.00029 * 3 2 1 6 6 C 1.50698 * 109.47499 * 119.99847 * 3 2 1 7 7 O 1.20825 * 119.99693 * 0.02562 * 6 3 2 8 8 O 1.34228 * 120.00447 * 179.97438 * 6 3 2 9 9 C 1.45196 * 117.00460 * 179.97438 * 8 6 3 10 10 H 1.09005 * 109.47021 * 330.00780 * 9 8 6 11 11 C 1.50698 * 109.47379 * 210.00329 * 9 8 6 12 12 H 1.08002 * 120.00201 * 0.02562 * 11 9 8 13 13 C 1.37881 * 119.99713 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99984 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99648 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47230 * 60.00091 * 15 13 11 17 17 H 1.48502 * 109.47140 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47057 * 299.99802 * 15 13 11 19 19 C 1.53003 * 109.47073 * 90.00101 * 9 8 6 20 20 C 1.53001 * 117.51964 * 231.28746 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.08004 * 119.99534 * 359.97438 * 1 2 3 23 23 H 1.07990 * 120.00001 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99554 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47691 * 180.02562 * 4 3 2 26 26 H 1.09006 * 109.47232 * 300.00240 * 4 3 2 27 27 H 1.09002 * 109.46950 * 60.00126 * 4 3 2 28 28 H 1.08998 * 109.46760 * 299.99728 * 5 3 2 29 29 H 1.08996 * 109.47092 * 59.99899 * 5 3 2 30 30 H 1.08993 * 109.46969 * 180.02562 * 5 3 2 31 31 H 0.97005 * 119.99628 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54973 * 85.58529 * 19 9 8 33 33 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 34 34 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 35 35 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 36 36 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9300 1.3850 1.2304 7 8 2.9354 0.4752 2.0255 8 8 3.6964 2.4663 1.4426 9 6 4.5047 2.4751 2.6487 10 1 4.0037 1.8980 3.4260 11 6 4.6910 3.8949 3.1183 12 1 4.2460 4.7092 2.5658 13 6 5.4296 4.1542 4.2534 14 7 5.9710 3.1626 4.9264 15 14 5.6599 5.9141 4.8359 16 1 4.3341 6.5174 5.1249 17 1 6.4867 5.9230 6.0694 18 1 6.3415 6.7008 3.7768 19 6 5.8705 1.8527 2.3519 20 6 6.3567 0.7386 3.2810 21 6 5.8950 0.4036 1.8613 22 1 -0.5399 0.9354 0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6144 3.4120 -0.0011 26 1 0.4430 2.4101 -0.8909 27 1 0.4424 2.4105 0.8891 28 1 3.6515 0.5576 -1.2492 29 1 2.3166 1.3283 -2.1393 30 1 3.4885 2.3298 -1.2491 31 1 6.4909 3.3451 5.7248 32 1 6.6196 2.5336 1.9477 33 1 7.4256 0.6866 3.4881 34 1 5.7037 0.4491 4.1043 35 1 4.9380 -0.1064 1.7504 36 1 6.6602 0.1313 1.1343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123365191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:08 Heat of formation + Delta-G solvation = -50.420674 kcal Electronic energy + Delta-G solvation = -17711.648525 eV Core-core repulsion = 14969.259590 eV Total energy + Delta-G solvation = -2742.388935 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96209 -37.13931 -35.70797 -34.84193 -32.63354 -30.79033 -27.80985 -27.24774 -24.19558 -23.07358 -21.27370 -21.06153 -19.25812 -18.22527 -16.88877 -16.41189 -15.98685 -15.23248 -14.85212 -14.50798 -13.93656 -13.84409 -13.08161 -12.83247 -12.23079 -12.17838 -11.95995 -11.67495 -11.38725 -11.27003 -11.09703 -10.99430 -10.91449 -10.60279 -10.39090 -10.26549 -9.81776 -9.59570 -9.36460 -9.21969 -8.97512 -8.62816 -8.40633 -6.13403 -4.21369 2.32500 3.04839 3.27488 3.31417 3.33322 3.77742 4.36243 4.73618 4.98202 5.08194 5.15528 5.19397 5.46824 5.59277 5.71447 5.78471 5.92835 5.96475 6.01844 6.04297 6.18636 6.30390 6.35599 6.44566 6.57006 6.66272 6.75858 6.84870 7.02562 7.18600 7.30527 7.43695 7.65428 7.88687 8.14991 8.68561 8.93091 9.43200 10.93316 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.007660 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.388851 B = 3654.304426 C = 4172.819103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.033 4.033 4 C -0.142 4.142 5 C -0.134 4.134 6 C 0.465 3.535 7 O -0.517 6.517 8 O -0.348 6.348 9 C 0.248 3.752 10 H 0.047 0.953 11 C -0.528 4.528 12 H 0.068 0.932 13 C 0.069 3.931 14 N -0.873 5.873 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.229 4.229 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -3.269 -9.715 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.140 4.140 3 C -0.034 4.034 4 C -0.199 4.199 5 C -0.191 4.191 6 C 0.308 3.692 7 O -0.407 6.407 8 O -0.264 6.264 9 C 0.196 3.804 10 H 0.064 0.936 11 C -0.566 4.566 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.509 5.509 15 Si 0.733 3.267 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.122 0.878 23 H 0.116 0.884 24 H 0.131 0.869 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.946 -3.546 -9.266 11.567 hybrid contribution 0.398 0.709 0.605 1.013 sum -5.548 -2.837 -8.661 10.670 Atomic orbital electron populations 1.23935 0.95814 1.02104 1.01530 1.22588 0.95696 0.96768 0.98935 1.19566 0.95041 0.95614 0.93162 1.21911 0.98392 0.97374 1.02233 1.21765 0.99026 1.03533 0.94800 1.23096 0.78662 0.81049 0.86401 1.90559 1.64763 1.38926 1.46421 1.86466 1.52487 1.40129 1.47319 1.20181 0.83900 0.97593 0.78725 0.93574 1.20874 1.34491 0.90834 1.10382 0.91380 1.24880 0.94982 0.97847 0.95830 1.70040 1.32879 1.30763 1.17238 0.86430 0.78289 0.83913 0.78031 1.20075 1.21117 1.20019 1.22588 1.00143 0.88297 1.02205 1.22350 0.99500 1.02489 0.91798 1.23271 1.02587 1.02016 0.98764 0.87827 0.88366 0.86891 0.90633 0.91433 0.91958 0.92129 0.91622 0.90673 0.92594 0.89390 0.90812 0.89385 0.88864 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 13.70 29.01 0.40 -1.99 16 2 C -0.12 -1.74 8.00 -36.03 -0.29 -2.02 16 3 C -0.03 -0.51 0.93 -156.81 -0.15 -0.65 16 4 C -0.14 -1.93 7.06 37.16 0.26 -1.67 16 5 C -0.13 -1.78 8.39 37.16 0.31 -1.47 16 6 C 0.47 9.74 5.77 36.00 0.21 9.95 16 7 O -0.52 -12.16 13.07 -18.75 -0.25 -12.40 16 8 O -0.35 -8.20 9.65 -39.25 -0.38 -8.58 16 9 C 0.25 6.58 2.25 -27.88 -0.06 6.52 16 10 H 0.05 1.37 6.92 -51.93 -0.36 1.01 16 11 C -0.53 -14.69 8.88 -34.44 -0.31 -15.00 16 12 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 13 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 14 N -0.87 -24.37 11.43 55.43 0.63 -23.74 16 15 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 19 C -0.11 -2.81 4.47 -90.61 -0.41 -3.21 16 20 C -0.12 -2.91 9.04 -26.73 -0.24 -3.15 16 21 C -0.23 -5.02 9.80 -26.73 -0.26 -5.28 16 22 H 0.10 1.15 5.69 -52.48 -0.30 0.85 16 23 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 24 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 25 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 26 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 27 H 0.06 0.87 7.49 -51.93 -0.39 0.48 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.24 8.11 -51.93 -0.42 1.81 16 33 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 2.21 8.05 -51.93 -0.42 1.79 16 35 H 0.09 2.12 5.37 -51.93 -0.28 1.84 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -29.61 298.77 -6.61 -36.23 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.48 Total: 4.22 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.63 Total: -16.19 kcal Atomic # 7 Polarization: -24.37 SS G_CDS: 0.63 Total: -23.74 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.62 Total: -20.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.61 -6.61 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123365191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds