Wall clock time and date at job start Sun Mar 29 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 120.00077 * 2 1 4 4 C 1.53000 * 109.47444 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.47118 * 240.00029 * 3 2 1 6 6 C 1.50698 * 109.47499 * 119.99847 * 3 2 1 7 7 O 1.20825 * 119.99693 * 0.02562 * 6 3 2 8 8 O 1.34228 * 120.00447 * 179.97438 * 6 3 2 9 9 C 1.45196 * 117.00460 * 179.97438 * 8 6 3 10 10 H 1.09005 * 109.47021 * 330.00780 * 9 8 6 11 11 C 1.50698 * 109.47379 * 210.00329 * 9 8 6 12 12 H 1.08002 * 120.00201 * 0.02562 * 11 9 8 13 13 C 1.37881 * 119.99713 * 180.02562 * 11 9 8 14 14 N 1.31510 * 119.99984 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99648 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47230 * 60.00091 * 15 13 11 17 17 H 1.48502 * 109.47140 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47057 * 299.99802 * 15 13 11 19 19 C 1.53003 * 109.47073 * 90.00101 * 9 8 6 20 20 C 1.53001 * 117.51964 * 231.28746 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.08004 * 119.99534 * 359.97438 * 1 2 3 23 23 H 1.07990 * 120.00001 * 180.02562 * 1 2 3 24 24 H 1.07996 * 119.99554 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47691 * 180.02562 * 4 3 2 26 26 H 1.09006 * 109.47232 * 300.00240 * 4 3 2 27 27 H 1.09002 * 109.46950 * 60.00126 * 4 3 2 28 28 H 1.08998 * 109.46760 * 299.99728 * 5 3 2 29 29 H 1.08996 * 109.47092 * 59.99899 * 5 3 2 30 30 H 1.08993 * 109.46969 * 180.02562 * 5 3 2 31 31 H 0.97005 * 119.99628 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54973 * 85.58529 * 19 9 8 33 33 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 34 34 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 35 35 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 36 36 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0694 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2493 6 6 2.9300 1.3850 1.2304 7 8 2.9354 0.4752 2.0255 8 8 3.6964 2.4663 1.4426 9 6 4.5047 2.4751 2.6487 10 1 4.0037 1.8980 3.4260 11 6 4.6910 3.8949 3.1183 12 1 4.2460 4.7092 2.5658 13 6 5.4296 4.1542 4.2534 14 7 5.9710 3.1626 4.9264 15 14 5.6599 5.9141 4.8359 16 1 4.3341 6.5174 5.1249 17 1 6.4867 5.9230 6.0694 18 1 6.3415 6.7008 3.7768 19 6 5.8705 1.8527 2.3519 20 6 6.3567 0.7386 3.2810 21 6 5.8950 0.4036 1.8613 22 1 -0.5399 0.9354 0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.6144 3.4120 -0.0011 26 1 0.4430 2.4101 -0.8909 27 1 0.4424 2.4105 0.8891 28 1 3.6515 0.5576 -1.2492 29 1 2.3166 1.3283 -2.1393 30 1 3.4885 2.3298 -1.2491 31 1 6.4909 3.3451 5.7248 32 1 6.6196 2.5336 1.9477 33 1 7.4256 0.6866 3.4881 34 1 5.7037 0.4491 4.1043 35 1 4.9380 -0.1064 1.7504 36 1 6.6602 0.1313 1.1343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123365191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:07 Heat of formation + Delta-G solvation = -65.920642 kcal Electronic energy + Delta-G solvation = -17712.320654 eV Core-core repulsion = 14969.259590 eV Total energy + Delta-G solvation = -2743.061064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63239 -38.74668 -37.25852 -36.68153 -34.71683 -31.88850 -29.82812 -28.31649 -25.81639 -24.79490 -23.10252 -22.60025 -21.16436 -19.66603 -18.64535 -18.18224 -17.51588 -17.00994 -16.58899 -16.02585 -15.61874 -15.17217 -14.70884 -14.48489 -13.77011 -13.50766 -13.18126 -13.15496 -13.04758 -12.91199 -12.77872 -12.67852 -12.30695 -12.17615 -12.15139 -11.81038 -11.65718 -11.36366 -11.08942 -10.93490 -10.61270 -10.45080 -10.34681 -8.21816 -6.39130 1.23120 1.39745 1.42321 1.44990 1.52775 2.17154 2.46287 3.05332 3.21923 3.60327 3.84038 4.00603 4.07821 4.13110 4.29203 4.42765 4.45858 4.65930 4.72672 4.77077 4.79643 4.86182 4.93082 5.01623 5.09380 5.24665 5.25960 5.31649 5.37680 5.47536 5.56006 5.69396 5.80672 5.86945 6.17036 6.64627 7.04500 7.31314 8.84345 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.007660 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.388851 B = 3654.304426 C = 4172.819103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.153 4.153 3 C -0.027 4.027 4 C -0.140 4.140 5 C -0.131 4.131 6 C 0.456 3.544 7 O -0.549 6.549 8 O -0.356 6.356 9 C 0.254 3.746 10 H 0.002 0.998 11 C -0.557 4.557 12 H 0.064 0.936 13 C 0.025 3.975 14 N -0.896 5.896 15 Si 0.974 3.026 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.199 4.199 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -2.850 -11.192 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C -0.028 4.028 4 C -0.197 4.197 5 C -0.188 4.188 6 C 0.301 3.699 7 O -0.440 6.440 8 O -0.272 6.272 9 C 0.201 3.799 10 H 0.020 0.980 11 C -0.594 4.594 12 H 0.083 0.917 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.798 3.202 16 H -0.196 1.196 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.236 4.236 22 H 0.135 0.865 23 H 0.136 0.864 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.632 -3.136 -10.764 13.026 hybrid contribution 0.510 0.509 1.068 1.289 sum -6.122 -2.627 -9.695 11.764 Atomic orbital electron populations 1.24232 0.95006 1.03759 0.97827 1.22522 0.96495 0.95749 1.02302 1.19735 0.94826 0.97373 0.90885 1.21957 0.98117 0.95888 1.03759 1.21793 0.99171 1.02799 0.95016 1.24403 0.78160 0.79608 0.87741 1.90531 1.65683 1.39751 1.48048 1.86465 1.52983 1.41752 1.45980 1.19802 0.84655 0.96579 0.78873 0.98016 1.21165 1.35457 0.91404 1.11409 0.91745 1.25735 0.94276 1.02164 0.95564 1.70161 1.32884 1.32774 1.17364 0.85374 0.78394 0.78687 0.77756 1.19601 1.20359 1.19061 1.22400 0.99083 0.89394 1.04006 1.22270 0.99844 1.02147 0.91874 1.23250 1.02869 0.99242 0.98242 0.86454 0.86354 0.87602 0.91676 0.87510 0.92707 0.92627 0.88065 0.91600 0.92396 0.90169 0.89179 0.91883 0.89826 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 13.70 67.77 0.93 -2.72 16 2 C -0.15 -4.11 8.00 25.64 0.21 -3.90 16 3 C -0.03 -0.82 0.93 -53.67 -0.05 -0.87 16 4 C -0.14 -3.55 7.06 71.98 0.51 -3.05 16 5 C -0.13 -3.26 8.39 71.98 0.60 -2.66 16 6 C 0.46 19.51 5.77 71.24 0.41 19.92 16 7 O -0.55 -26.76 13.07 21.97 0.29 -26.47 16 8 O -0.36 -17.29 9.65 -51.40 -0.50 -17.79 16 9 C 0.25 14.01 2.25 29.85 0.07 14.08 16 10 H 0.00 0.13 6.92 -2.38 -0.02 0.11 16 11 C -0.56 -31.87 8.88 25.60 0.23 -31.64 16 12 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 13 C 0.02 1.36 5.30 84.66 0.45 1.81 16 14 N -0.90 -50.97 11.43 21.45 0.25 -50.73 16 15 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 C -0.13 -6.58 4.47 -10.79 -0.05 -6.62 16 20 C -0.12 -5.92 9.04 30.59 0.28 -5.64 16 21 C -0.20 -8.69 9.80 30.60 0.30 -8.39 16 22 H 0.12 2.16 5.69 -2.91 -0.02 2.15 16 23 H 0.12 2.05 8.06 -2.92 -0.02 2.02 16 24 H 0.11 2.96 8.06 -2.91 -0.02 2.94 16 25 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 26 H 0.11 1.86 7.50 -2.38 -0.02 1.84 16 27 H 0.05 1.45 7.49 -2.39 -0.02 1.44 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 31 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.08 4.15 8.11 -2.39 -0.02 4.13 16 33 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 34 H 0.06 3.30 8.05 -2.39 -0.02 3.28 16 35 H 0.08 3.85 5.37 -2.39 -0.01 3.83 16 36 H 0.10 3.85 8.14 -2.38 -0.02 3.83 16 Total: -1.00 -66.01 298.77 6.98 -59.02 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.04 Total: 20.50 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.88 Total: -29.68 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.25 Total: -50.73 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.21 Total: -44.26 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -66.01 6.98 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123365191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.898 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds