Wall clock time and date at job start Sun Mar 29 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.20825 * 119.99819 * 240.00052 * 4 2 1 6 6 O 1.34226 * 119.99822 * 59.99316 * 4 2 1 7 7 C 1.45209 * 116.99600 * 179.97438 * 6 4 2 8 8 H 1.08993 * 109.47297 * 330.00795 * 7 6 4 9 9 C 1.50697 * 109.47183 * 210.00329 * 7 6 4 10 10 H 1.08007 * 119.99794 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00288 * 180.02562 * 9 7 6 12 12 N 1.31516 * 120.00287 * 180.02562 * 11 9 7 13 13 Si 1.86801 * 119.99683 * 359.97438 * 11 9 7 14 14 H 1.48496 * 109.47179 * 90.00350 * 13 11 9 15 15 H 1.48499 * 109.47046 * 210.00421 * 13 11 9 16 16 H 1.48500 * 109.47161 * 330.00096 * 13 11 9 17 17 C 1.53004 * 109.46389 * 90.00597 * 7 6 4 18 18 C 1.52993 * 117.50408 * 8.74899 * 17 7 6 19 19 C 1.52998 * 117.49949 * 300.08268 * 17 7 6 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 C 1.52996 * 117.50276 * 248.62252 * 20 2 1 22 22 C 1.52993 * 60.00427 * 252.50569 * 21 20 2 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97000 * 119.99557 * 179.97438 * 12 11 9 27 27 H 1.09004 * 115.54575 * 154.41581 * 17 7 6 28 28 H 1.09005 * 117.49585 * 359.97438 * 18 17 7 29 29 H 1.09002 * 117.50421 * 145.02225 * 18 17 7 30 30 H 1.09005 * 117.49835 * 214.98472 * 19 17 7 31 31 H 1.09003 * 117.49708 * 0.02562 * 19 17 7 32 32 H 1.09007 * 115.55057 * 34.33123 * 20 2 1 33 33 H 1.09003 * 117.49933 * 359.97438 * 21 20 2 34 34 H 1.09000 * 117.50148 * 145.01863 * 21 20 2 35 35 H 1.08997 * 117.50357 * 252.51377 * 22 21 20 36 36 H 1.08997 * 117.49776 * 107.48026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7270 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4496 7 6 2.2277 -0.9855 -3.5898 8 1 3.1807 -1.4428 -3.3238 9 6 2.4293 -0.0403 -4.7460 10 1 2.1911 1.0073 -4.6349 11 6 2.9178 -0.5128 -5.9456 12 7 3.0943 0.3122 -6.9545 13 14 3.3305 -2.3245 -6.1374 14 1 2.1326 -3.0565 -6.6215 15 1 4.4350 -2.4795 -7.1178 16 1 3.7520 -2.8778 -4.8253 17 6 1.2327 -2.0766 -3.9904 18 6 -0.1378 -2.0672 -3.3105 19 6 0.8912 -3.1399 -2.9447 20 6 2.0400 -0.7212 1.2491 21 6 2.7419 0.1225 2.3150 22 6 3.5551 -0.8281 1.4342 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 3.4383 -0.0202 -7.7983 27 1 1.2750 -2.3915 -5.0331 28 1 -0.3305 -1.2839 -2.5773 29 1 -0.9972 -2.3763 -3.9056 30 1 0.7084 -4.1543 -3.2994 31 1 1.3751 -3.0619 -1.9710 32 1 1.4311 -1.5586 1.5901 33 1 2.8408 1.1915 2.1262 34 1 2.5948 -0.1594 3.3576 35 1 3.9428 -1.7355 1.8972 36 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:27 Heat of formation + Delta-G solvation = -39.817049 kcal Electronic energy + Delta-G solvation = -17750.260067 eV Core-core repulsion = 15008.330940 eV Total energy + Delta-G solvation = -2741.929128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18340 -37.80855 -36.30606 -34.89031 -32.80557 -32.29349 -28.65635 -24.85848 -23.04703 -22.28277 -22.02904 -21.66982 -20.05211 -19.15473 -17.08259 -16.64809 -16.24735 -15.73476 -15.15446 -14.76687 -14.26861 -13.83457 -13.41459 -12.81273 -12.53551 -12.32919 -11.99749 -11.76985 -11.62926 -11.51969 -11.29795 -10.99603 -10.91922 -10.73199 -10.36639 -10.20496 -10.02862 -9.93502 -9.66560 -9.57256 -9.24299 -8.79734 -8.67328 -6.23117 -4.25178 2.87309 3.17737 3.29653 3.35202 3.37497 4.06306 4.27151 4.54695 4.57712 4.88189 5.01479 5.05511 5.11507 5.33421 5.43794 5.54405 5.56588 5.65400 5.69300 5.73721 5.84916 5.98514 5.99577 6.10226 6.17475 6.22715 6.27449 6.38481 6.51487 6.74771 6.80289 6.87377 7.36213 7.53311 8.25134 8.63530 8.84722 9.34225 10.88650 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031408 B = 0.007609 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.271089 B = 3678.887218 C = 3836.530343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 H 0.103 0.897 4 C 0.454 3.546 5 O -0.510 6.510 6 O -0.339 6.339 7 C 0.225 3.775 8 H 0.051 0.949 9 C -0.519 4.519 10 H 0.087 0.913 11 C 0.081 3.919 12 N -0.888 5.888 13 Si 0.873 3.127 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.256 1.256 17 C -0.164 4.164 18 C -0.171 4.171 19 C -0.207 4.207 20 C -0.139 4.139 21 C -0.182 4.182 22 C -0.158 4.158 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.269 0.731 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -2.323 14.536 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 H 0.121 0.879 4 C 0.296 3.704 5 O -0.400 6.400 6 O -0.254 6.254 7 C 0.171 3.829 8 H 0.068 0.932 9 C -0.557 4.557 10 H 0.105 0.895 11 C -0.123 4.123 12 N -0.524 5.524 13 Si 0.700 3.300 14 H -0.201 1.201 15 H -0.215 1.215 16 H -0.180 1.180 17 C -0.182 4.182 18 C -0.208 4.208 19 C -0.243 4.243 20 C -0.157 4.157 21 C -0.219 4.219 22 C -0.195 4.195 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.931 -2.589 14.310 15.065 hybrid contribution 0.227 -1.129 -0.464 1.242 sum -3.705 -3.719 13.846 14.808 Atomic orbital electron populations 1.21736 0.92070 1.02804 1.03167 1.20570 0.97969 0.99932 0.89100 0.87865 1.23456 0.77764 0.83085 0.86055 1.90567 1.35812 1.26018 1.87580 1.86517 1.68734 1.55639 1.14535 1.20427 0.91539 0.89323 0.81586 0.93171 1.20727 1.44475 0.96507 0.93957 0.89452 1.24717 0.94577 0.97799 0.95173 1.69843 1.44592 1.35008 1.02991 0.87059 0.78094 0.85687 0.79112 1.20061 1.21507 1.18045 1.23413 0.98396 0.98928 0.97460 1.22784 0.92757 1.01327 1.03975 1.23260 1.04847 0.94428 1.01811 1.21999 0.96287 1.01613 0.95789 1.23085 1.05070 0.97675 0.96026 1.22814 0.93586 1.01044 1.02030 0.91404 0.92159 0.90820 0.92088 0.87552 0.88740 0.89746 0.90071 0.87955 0.87454 0.88777 0.88828 0.88836 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.10 37.16 0.34 -1.35 16 2 C -0.06 -0.80 2.98 -91.77 -0.27 -1.08 16 3 H 0.10 1.36 7.90 -51.93 -0.41 0.95 16 4 C 0.45 8.72 6.08 36.01 0.22 8.94 16 5 O -0.51 -10.82 12.13 -18.75 -0.23 -11.04 16 6 O -0.34 -7.56 8.29 -39.25 -0.33 -7.88 16 7 C 0.23 5.65 2.00 -27.88 -0.06 5.59 16 8 H 0.05 1.35 6.21 -51.93 -0.32 1.02 16 9 C -0.52 -14.84 9.48 -34.44 -0.33 -15.17 16 10 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 11 C 0.08 2.31 5.44 -17.82 -0.10 2.22 16 12 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 13 Si 0.87 21.66 24.48 -169.99 -4.16 17.50 16 14 H -0.27 -6.55 6.72 56.52 0.38 -6.17 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 17 C -0.16 -3.76 4.45 -90.62 -0.40 -4.16 16 18 C -0.17 -3.31 9.80 -26.69 -0.26 -3.57 16 19 C -0.21 -4.09 9.85 -26.69 -0.26 -4.35 16 20 C -0.14 -1.76 4.72 -90.62 -0.43 -2.18 16 21 C -0.18 -1.89 10.18 -26.74 -0.27 -2.17 16 22 C -0.16 -2.05 8.97 -26.73 -0.24 -2.29 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.11 2.56 4.39 -51.93 -0.23 2.33 16 28 H 0.09 1.76 6.90 -51.93 -0.36 1.40 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.10 2.09 5.37 -51.93 -0.28 1.81 16 32 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 33 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 290.64 15.07 4.38 4.38 Total: -1.00 -30.70 290.64 -7.05 -37.75 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.43 Total: 4.75 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.06 Total: -19.57 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.77 Total: -25.88 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.55 Total: -18.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.16 Total: 17.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.70 -7.05 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.065 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds