Wall clock time and date at job start Sun Mar 29 2020 22:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 O 1.20825 * 119.99819 * 240.00052 * 4 2 1 6 6 O 1.34226 * 119.99822 * 59.99316 * 4 2 1 7 7 C 1.45209 * 116.99600 * 179.97438 * 6 4 2 8 8 H 1.08993 * 109.47297 * 330.00795 * 7 6 4 9 9 C 1.50697 * 109.47183 * 210.00329 * 7 6 4 10 10 H 1.08007 * 119.99794 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00288 * 180.02562 * 9 7 6 12 12 N 1.31516 * 120.00287 * 180.02562 * 11 9 7 13 13 Si 1.86801 * 119.99683 * 359.97438 * 11 9 7 14 14 H 1.48496 * 109.47179 * 90.00350 * 13 11 9 15 15 H 1.48499 * 109.47046 * 210.00421 * 13 11 9 16 16 H 1.48500 * 109.47161 * 330.00096 * 13 11 9 17 17 C 1.53004 * 109.46389 * 90.00597 * 7 6 4 18 18 C 1.52993 * 117.50408 * 8.74899 * 17 7 6 19 19 C 1.52998 * 117.49949 * 300.08268 * 17 7 6 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 C 1.52996 * 117.50276 * 248.62252 * 20 2 1 22 22 C 1.52993 * 60.00427 * 252.50569 * 21 20 2 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.97000 * 119.99557 * 179.97438 * 12 11 9 27 27 H 1.09004 * 115.54575 * 154.41581 * 17 7 6 28 28 H 1.09005 * 117.49585 * 359.97438 * 18 17 7 29 29 H 1.09002 * 117.50421 * 145.02225 * 18 17 7 30 30 H 1.09005 * 117.49835 * 214.98472 * 19 17 7 31 31 H 1.09003 * 117.49708 * 0.02562 * 19 17 7 32 32 H 1.09007 * 115.55057 * 34.33123 * 20 2 1 33 33 H 1.09003 * 117.49933 * 359.97438 * 21 20 2 34 34 H 1.09000 * 117.50148 * 145.01863 * 21 20 2 35 35 H 1.08997 * 117.50357 * 252.51377 * 22 21 20 36 36 H 1.08997 * 117.49776 * 107.48026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.7270 -1.6927 -1.1197 6 8 1.7080 -0.2517 -2.4496 7 6 2.2277 -0.9855 -3.5898 8 1 3.1807 -1.4428 -3.3238 9 6 2.4293 -0.0403 -4.7460 10 1 2.1911 1.0073 -4.6349 11 6 2.9178 -0.5128 -5.9456 12 7 3.0943 0.3122 -6.9545 13 14 3.3305 -2.3245 -6.1374 14 1 2.1326 -3.0565 -6.6215 15 1 4.4350 -2.4795 -7.1178 16 1 3.7520 -2.8778 -4.8253 17 6 1.2327 -2.0766 -3.9904 18 6 -0.1378 -2.0672 -3.3105 19 6 0.8912 -3.1399 -2.9447 20 6 2.0400 -0.7212 1.2491 21 6 2.7419 0.1225 2.3150 22 6 3.5551 -0.8281 1.4342 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 3.4383 -0.0202 -7.7983 27 1 1.2750 -2.3915 -5.0331 28 1 -0.3305 -1.2839 -2.5773 29 1 -0.9972 -2.3763 -3.9056 30 1 0.7084 -4.1543 -3.2994 31 1 1.3751 -3.0619 -1.9710 32 1 1.4311 -1.5586 1.5901 33 1 2.8408 1.1915 2.1262 34 1 2.5948 -0.1594 3.3576 35 1 3.9428 -1.7355 1.8972 36 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123370600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:26 Heat of formation + Delta-G solvation = -57.352483 kcal Electronic energy + Delta-G solvation = -17751.020461 eV Core-core repulsion = 15008.330940 eV Total energy + Delta-G solvation = -2742.689521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75751 -39.13286 -37.73277 -36.55764 -34.93178 -33.43996 -30.65769 -26.07576 -24.91373 -23.50031 -23.28205 -23.08538 -21.58604 -20.63915 -18.97016 -18.40698 -17.82189 -17.48786 -16.40694 -16.09128 -15.65825 -15.46581 -14.96253 -14.77617 -13.86782 -13.68417 -13.47218 -13.40309 -13.16739 -12.79230 -12.66222 -12.40282 -12.36199 -12.16906 -12.01399 -11.89618 -11.48023 -11.44805 -11.16061 -10.99610 -10.87300 -10.74590 -10.65303 -8.45962 -6.53585 1.19925 1.28174 1.34926 1.40238 1.90277 2.18693 2.81246 2.95129 3.04178 3.55380 3.79558 3.87459 3.92580 4.00800 4.10718 4.16684 4.20020 4.34662 4.48358 4.58179 4.71643 4.81247 4.82355 4.91528 4.98696 5.00285 5.05372 5.10060 5.19527 5.24790 5.27609 5.35330 5.36910 5.70973 6.16701 6.49912 6.96008 7.12692 8.69752 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031408 B = 0.007609 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.271089 B = 3678.887218 C = 3836.530343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 H 0.113 0.887 4 C 0.447 3.553 5 O -0.532 6.532 6 O -0.351 6.351 7 C 0.233 3.767 8 H 0.026 0.974 9 C -0.533 4.533 10 H 0.047 0.953 11 C 0.033 3.967 12 N -0.929 5.929 13 Si 0.936 3.064 14 H -0.254 1.254 15 H -0.282 1.282 16 H -0.257 1.257 17 C -0.201 4.201 18 C -0.152 4.152 19 C -0.187 4.187 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.182 4.182 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.275 0.725 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -3.688 16.534 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 H 0.131 0.869 4 C 0.292 3.708 5 O -0.422 6.422 6 O -0.267 6.267 7 C 0.179 3.821 8 H 0.044 0.956 9 C -0.570 4.570 10 H 0.065 0.935 11 C -0.167 4.167 12 N -0.568 5.568 13 Si 0.760 3.240 14 H -0.179 1.179 15 H -0.209 1.209 16 H -0.181 1.181 17 C -0.219 4.219 18 C -0.189 4.189 19 C -0.224 4.224 20 C -0.166 4.166 21 C -0.185 4.185 22 C -0.219 4.219 23 H 0.119 0.881 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.116 0.884 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.329 -3.948 16.329 17.625 hybrid contribution 0.687 -0.598 -1.013 1.362 sum -4.643 -4.546 15.316 16.638 Atomic orbital electron populations 1.21753 0.90008 1.03258 1.04277 1.20760 0.99581 0.99799 0.86886 0.86914 1.24579 0.77096 0.83082 0.86090 1.90547 1.36739 1.27240 1.87643 1.86510 1.68969 1.55936 1.15305 1.19942 0.91682 0.89094 0.81394 0.95595 1.20915 1.44712 0.95529 0.95879 0.93507 1.25502 0.94158 1.02387 0.94643 1.69962 1.45760 1.37274 1.03771 0.86039 0.78652 0.80258 0.79012 1.17867 1.20856 1.18091 1.23152 1.00682 1.00327 0.97763 1.22934 0.91958 1.00930 1.03070 1.23277 1.03821 0.95213 1.00086 1.22058 0.95853 1.02761 0.95948 1.23188 1.01211 0.97595 0.96479 1.22798 0.93694 1.02455 1.02982 0.88062 0.92027 0.91932 0.91608 0.88627 0.88334 0.87145 0.87496 0.88731 0.86549 0.87813 0.86260 0.88423 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.10 71.98 0.65 -2.26 16 2 C -0.05 -1.37 2.98 -11.54 -0.03 -1.41 16 3 H 0.11 2.80 7.90 -2.39 -0.02 2.78 16 4 C 0.45 17.13 6.08 71.24 0.43 17.57 16 5 O -0.53 -22.62 12.13 21.97 0.27 -22.35 16 6 O -0.35 -15.94 8.29 -51.38 -0.43 -16.37 16 7 C 0.23 11.95 2.00 29.85 0.06 12.01 16 8 H 0.03 1.45 6.21 -2.39 -0.01 1.43 16 9 C -0.53 -31.75 9.48 25.60 0.24 -31.51 16 10 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 11 C 0.03 1.93 5.44 84.65 0.46 2.39 16 12 N -0.93 -57.49 13.96 21.45 0.30 -57.19 16 13 Si 0.94 45.29 24.48 68.60 1.68 46.97 16 14 H -0.25 -11.37 6.72 99.48 0.67 -10.70 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 17 C -0.20 -9.04 4.45 -10.80 -0.05 -9.09 16 18 C -0.15 -5.52 9.80 30.62 0.30 -5.22 16 19 C -0.19 -6.96 9.85 30.62 0.30 -6.66 16 20 C -0.15 -3.41 4.72 -10.80 -0.05 -3.46 16 21 C -0.15 -2.61 10.18 30.59 0.31 -2.30 16 22 C -0.18 -4.53 8.97 30.59 0.27 -4.26 16 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.49 8.11 -2.38 -0.02 1.47 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.10 4.49 4.39 -2.38 -0.01 4.48 16 28 H 0.10 3.47 6.90 -2.38 -0.02 3.46 16 29 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 31 H 0.09 3.69 5.37 -2.39 -0.01 3.68 16 32 H 0.12 2.48 8.11 -2.38 -0.02 2.46 16 33 H 0.10 1.66 8.05 -2.39 -0.02 1.64 16 34 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -68.93 290.64 5.69 -63.24 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.96 Total: 19.88 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 2.90 Total: -34.18 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.30 Total: -57.19 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.16 Total: -38.72 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.68 Total: 46.97 kcal Total: -68.93 5.69 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.887 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds