Wall clock time and date at job start Sun Mar 29 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 115.56455 * 2 1 4 4 C 1.53005 * 117.49787 * 214.31231 * 2 1 3 5 5 C 1.53008 * 117.49547 * 145.68997 * 2 1 3 6 6 H 1.08998 * 117.51688 * 214.96857 * 5 2 1 7 7 C 1.50701 * 117.49866 * 0.02562 * 5 2 1 8 8 O 1.20827 * 120.00134 * 0.02562 * 7 5 2 9 9 O 1.34222 * 119.99720 * 180.02562 * 7 5 2 10 10 C 1.45205 * 117.00100 * 179.97438 * 9 7 5 11 11 H 1.09004 * 109.46732 * 329.99635 * 10 9 7 12 12 C 1.50697 * 109.47152 * 209.99877 * 10 9 7 13 13 H 1.07994 * 120.00109 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99699 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00127 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99831 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47139 * 90.00353 * 16 14 12 18 18 H 1.48506 * 109.47002 * 210.00254 * 16 14 12 19 19 H 1.48500 * 109.47182 * 330.00207 * 16 14 12 20 20 C 1.53002 * 109.47403 * 89.99394 * 10 9 7 21 21 C 1.53002 * 117.49773 * 300.00622 * 20 10 9 22 22 C 1.53000 * 60.02940 * 252.51785 * 21 20 10 23 23 H 1.08997 * 109.47502 * 274.31369 * 1 2 3 24 24 H 1.09005 * 109.47144 * 34.30552 * 1 2 3 25 25 H 1.08995 * 109.47359 * 154.31105 * 1 2 3 26 26 H 1.08996 * 109.47281 * 205.68662 * 3 2 1 27 27 H 1.08993 * 109.46956 * 325.69164 * 3 2 1 28 28 H 1.09006 * 109.46686 * 85.68900 * 3 2 1 29 29 H 1.08988 * 117.49808 * 145.02427 * 4 2 1 30 30 H 1.09000 * 117.49798 * 359.97438 * 4 2 1 31 31 H 0.97007 * 119.99676 * 179.97438 * 15 14 12 32 32 H 1.09000 * 115.55766 * 85.68938 * 20 10 9 33 33 H 1.09002 * 117.49918 * 145.01819 * 21 20 10 34 34 H 1.09002 * 117.49754 * 0.02562 * 21 20 10 35 35 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 36 36 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7650 6 1 3.1715 -0.8757 1.2683 7 6 1.3719 -2.1410 1.4603 8 8 0.1682 -2.0545 1.4002 9 8 1.9390 -3.1456 2.1464 10 6 1.0450 -4.0907 2.7914 11 1 0.1199 -3.5850 3.0679 12 6 1.7051 -4.6426 4.0286 13 1 2.6973 -4.3161 4.3026 14 6 1.0421 -5.5644 4.8107 15 7 -0.1661 -5.9624 4.4767 16 14 1.8605 -6.2491 6.3440 17 1 1.5263 -5.3907 7.5088 18 1 1.3730 -7.6300 6.5907 19 1 3.3328 -6.2709 6.1515 20 6 0.7314 -5.2360 1.8265 21 6 0.0545 -4.8784 0.5018 22 6 -0.7415 -5.5861 1.6002 23 1 -0.3634 0.0773 1.0247 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4454 26 1 3.1824 1.3083 -0.4454 27 1 1.5812 2.0742 -0.5792 28 1 2.2773 1.7412 1.0248 29 1 3.1714 -0.8752 -1.2682 30 1 1.6111 -1.8587 -1.2680 31 1 -0.6324 -6.6112 5.0269 32 1 1.4506 -6.0550 1.8193 33 1 0.3283 -5.4622 -0.3770 34 1 -0.1670 -3.8272 0.3175 35 1 -1.4865 -5.0003 2.1388 36 1 -0.9917 -6.6354 1.4439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123466277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:43 Heat of formation + Delta-G solvation = -45.309930 kcal Electronic energy + Delta-G solvation = -17539.701198 eV Core-core repulsion = 14797.533881 eV Total energy + Delta-G solvation = -2742.167317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03442 -37.85710 -35.95087 -34.77215 -32.62696 -29.54374 -27.83485 -27.34715 -24.48035 -22.89713 -21.22430 -20.45682 -19.22915 -18.72740 -17.07368 -16.48453 -15.65244 -15.00071 -14.52945 -14.32742 -13.92230 -13.65287 -13.48427 -12.65578 -12.63048 -12.37733 -11.92495 -11.78138 -11.42979 -11.24658 -11.16658 -11.03352 -10.88702 -10.44164 -10.24185 -10.06607 -9.82616 -9.71531 -9.42810 -9.19592 -8.98018 -8.61967 -8.40642 -6.13332 -4.21000 2.86546 3.26197 3.31891 3.35046 3.57182 3.94519 4.35865 4.73229 4.88496 4.97167 5.12294 5.14225 5.21816 5.62031 5.68395 5.70662 5.85056 5.94462 5.95996 6.08263 6.09954 6.14596 6.20278 6.29362 6.42318 6.55360 6.65545 6.75539 7.02126 7.18412 7.30986 7.44567 7.66308 7.89133 8.16010 8.70520 8.95142 9.43680 10.93424 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.006817 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.904004 B = 4106.651217 C = 4562.959863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.146 4.146 5 C -0.160 4.160 6 H 0.127 0.873 7 C 0.483 3.517 8 O -0.514 6.514 9 O -0.350 6.350 10 C 0.249 3.751 11 H 0.048 0.952 12 C -0.528 4.528 13 H 0.068 0.932 14 C 0.069 3.931 15 N -0.873 5.873 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.113 4.113 21 C -0.229 4.229 22 C -0.124 4.124 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 8.866 -8.648 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.172 4.172 4 C -0.183 4.183 5 C -0.180 4.180 6 H 0.145 0.855 7 C 0.327 3.673 8 O -0.405 6.405 9 O -0.266 6.266 10 C 0.197 3.803 11 H 0.066 0.934 12 C -0.565 4.565 13 H 0.086 0.914 14 C -0.135 4.135 15 N -0.510 5.510 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.133 4.133 21 C -0.266 4.266 22 C -0.161 4.161 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.690 8.704 -8.567 12.506 hybrid contribution 0.338 -0.735 0.923 1.227 sum 3.027 7.969 -7.644 11.450 Atomic orbital electron populations 1.21380 0.90649 1.01319 1.02762 1.21649 0.96081 0.90545 1.01650 1.21382 0.99826 0.93750 1.02200 1.23227 1.02701 1.01282 0.91116 1.21927 1.01770 0.98987 0.95268 0.85494 1.22254 0.87066 0.81203 0.76818 1.90564 1.16073 1.74634 1.59247 1.86472 1.43846 1.35917 1.60345 1.20189 0.89533 0.82147 0.88473 0.93448 1.20921 1.03343 1.25626 1.06652 0.91360 1.24880 0.94932 0.95830 0.97903 1.70054 1.11658 1.31070 1.38168 0.86369 0.79688 0.78149 0.82473 1.20479 1.21034 1.19660 1.22596 0.95502 1.00921 0.94231 1.23264 1.08981 1.01382 0.92943 1.22359 0.95330 0.98822 0.99595 0.91253 0.93475 0.91574 0.92313 0.91765 0.91933 0.87844 0.88206 0.92664 0.89420 0.91140 0.88839 0.89368 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 8.09 37.16 0.30 -1.19 16 2 C -0.10 -1.31 2.70 -154.50 -0.42 -1.73 16 3 C -0.11 -1.16 9.85 37.16 0.37 -0.79 16 4 C -0.15 -1.89 9.52 -26.72 -0.25 -2.14 16 5 C -0.16 -2.52 6.02 -91.76 -0.55 -3.07 16 6 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 7 C 0.48 10.11 6.94 36.01 0.25 10.36 16 8 O -0.51 -11.53 10.16 -18.75 -0.19 -11.72 16 9 O -0.35 -8.46 9.84 -39.24 -0.39 -8.85 16 10 C 0.25 6.64 2.25 -27.88 -0.06 6.58 16 11 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 12 C -0.53 -14.84 8.88 -34.44 -0.31 -15.15 16 13 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 15 N -0.87 -24.43 11.44 55.43 0.63 -23.80 16 16 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.11 -2.82 4.48 -90.58 -0.41 -3.23 16 21 C -0.23 -4.98 9.80 -26.73 -0.26 -5.24 16 22 C -0.12 -2.89 9.06 -26.70 -0.24 -3.13 16 23 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 24 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 25 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 26 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 27 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.06 8.05 -51.94 -0.42 0.64 16 30 H 0.10 1.36 8.05 -51.93 -0.42 0.94 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 35 H 0.09 2.20 8.05 -51.92 -0.42 1.78 16 36 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -29.34 296.45 -7.70 -37.03 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.52 Total: 3.74 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.68 Total: -16.96 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.63 Total: -23.80 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.58 Total: -20.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.34 -7.70 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123466277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.275 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds