Wall clock time and date at job start Sun Mar 29 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 115.56455 * 2 1 4 4 C 1.53005 * 117.49787 * 214.31231 * 2 1 3 5 5 C 1.53008 * 117.49547 * 145.68997 * 2 1 3 6 6 H 1.08998 * 117.51688 * 214.96857 * 5 2 1 7 7 C 1.50701 * 117.49866 * 0.02562 * 5 2 1 8 8 O 1.20827 * 120.00134 * 0.02562 * 7 5 2 9 9 O 1.34222 * 119.99720 * 180.02562 * 7 5 2 10 10 C 1.45205 * 117.00100 * 179.97438 * 9 7 5 11 11 H 1.09004 * 109.46732 * 329.99635 * 10 9 7 12 12 C 1.50697 * 109.47152 * 209.99877 * 10 9 7 13 13 H 1.07994 * 120.00109 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99699 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00127 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99831 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47139 * 90.00353 * 16 14 12 18 18 H 1.48506 * 109.47002 * 210.00254 * 16 14 12 19 19 H 1.48500 * 109.47182 * 330.00207 * 16 14 12 20 20 C 1.53002 * 109.47403 * 89.99394 * 10 9 7 21 21 C 1.53002 * 117.49773 * 300.00622 * 20 10 9 22 22 C 1.53000 * 60.02940 * 252.51785 * 21 20 10 23 23 H 1.08997 * 109.47502 * 274.31369 * 1 2 3 24 24 H 1.09005 * 109.47144 * 34.30552 * 1 2 3 25 25 H 1.08995 * 109.47359 * 154.31105 * 1 2 3 26 26 H 1.08996 * 109.47281 * 205.68662 * 3 2 1 27 27 H 1.08993 * 109.46956 * 325.69164 * 3 2 1 28 28 H 1.09006 * 109.46686 * 85.68900 * 3 2 1 29 29 H 1.08988 * 117.49808 * 145.02427 * 4 2 1 30 30 H 1.09000 * 117.49798 * 359.97438 * 4 2 1 31 31 H 0.97007 * 119.99676 * 179.97438 * 15 14 12 32 32 H 1.09000 * 115.55766 * 85.68938 * 20 10 9 33 33 H 1.09002 * 117.49918 * 145.01819 * 21 20 10 34 34 H 1.09002 * 117.49754 * 0.02562 * 21 20 10 35 35 H 1.09008 * 117.49673 * 107.47884 * 22 21 20 36 36 H 1.08999 * 117.49942 * 252.47315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7650 6 1 3.1715 -0.8757 1.2683 7 6 1.3719 -2.1410 1.4603 8 8 0.1682 -2.0545 1.4002 9 8 1.9390 -3.1456 2.1464 10 6 1.0450 -4.0907 2.7914 11 1 0.1199 -3.5850 3.0679 12 6 1.7051 -4.6426 4.0286 13 1 2.6973 -4.3161 4.3026 14 6 1.0421 -5.5644 4.8107 15 7 -0.1661 -5.9624 4.4767 16 14 1.8605 -6.2491 6.3440 17 1 1.5263 -5.3907 7.5088 18 1 1.3730 -7.6300 6.5907 19 1 3.3328 -6.2709 6.1515 20 6 0.7314 -5.2360 1.8265 21 6 0.0545 -4.8784 0.5018 22 6 -0.7415 -5.5861 1.6002 23 1 -0.3634 0.0773 1.0247 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4454 26 1 3.1824 1.3083 -0.4454 27 1 1.5812 2.0742 -0.5792 28 1 2.2773 1.7412 1.0248 29 1 3.1714 -0.8752 -1.2682 30 1 1.6111 -1.8587 -1.2680 31 1 -0.6324 -6.6112 5.0269 32 1 1.4506 -6.0550 1.8193 33 1 0.3283 -5.4622 -0.3770 34 1 -0.1670 -3.8272 0.3175 35 1 -1.4865 -5.0003 2.1388 36 1 -0.9917 -6.6354 1.4439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123466277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:43 Heat of formation + Delta-G solvation = -60.393357 kcal Electronic energy + Delta-G solvation = -17540.355265 eV Core-core repulsion = 14797.533881 eV Total energy + Delta-G solvation = -2742.821383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63505 -39.31836 -37.67605 -36.59166 -34.72718 -30.74125 -29.74781 -28.33601 -26.09110 -24.72785 -23.09089 -21.97152 -21.07296 -20.02353 -18.83186 -18.39897 -17.32990 -16.88739 -16.33227 -15.72657 -15.51948 -14.91875 -14.66750 -14.40293 -14.18626 -13.57791 -13.36993 -13.26693 -13.02579 -12.85973 -12.77977 -12.67478 -12.29087 -12.20416 -12.10780 -11.81851 -11.35756 -11.19597 -11.03502 -10.97104 -10.63271 -10.60780 -10.42453 -8.23264 -6.40479 1.30333 1.40898 1.42140 1.53268 1.99285 2.41471 2.74887 3.04030 3.20654 3.60668 3.82917 3.84812 4.08652 4.16471 4.19986 4.28919 4.42351 4.62689 4.75338 4.76601 4.82848 4.83617 5.00429 5.05291 5.08257 5.10494 5.11628 5.24804 5.31807 5.37813 5.46390 5.51750 5.59137 5.86410 6.17972 6.63515 7.07485 7.30648 8.83059 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033211 B = 0.006817 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.904004 B = 4106.651217 C = 4562.959863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.090 4.090 3 C -0.111 4.111 4 C -0.126 4.126 5 C -0.185 4.185 6 H 0.144 0.856 7 C 0.473 3.527 8 O -0.537 6.537 9 O -0.365 6.365 10 C 0.255 3.745 11 H 0.006 0.994 12 C -0.559 4.559 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.266 1.266 20 C -0.132 4.132 21 C -0.197 4.197 22 C -0.123 4.123 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 9.542 -9.817 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.167 4.167 4 C -0.163 4.163 5 C -0.204 4.204 6 H 0.161 0.839 7 C 0.318 3.682 8 O -0.428 6.428 9 O -0.281 6.281 10 C 0.202 3.798 11 H 0.023 0.977 12 C -0.596 4.596 13 H 0.080 0.920 14 C -0.177 4.177 15 N -0.531 5.531 16 Si 0.798 3.202 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.151 4.151 21 C -0.234 4.234 22 C -0.160 4.160 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.049 9.399 -9.754 14.138 hybrid contribution -0.154 -0.880 1.251 1.537 sum 3.895 8.518 -8.504 12.651 Atomic orbital electron populations 1.21332 0.91997 1.01465 1.01286 1.21853 0.95251 0.91976 0.99933 1.21423 1.00962 0.91584 1.02764 1.23411 1.03973 1.00265 0.88602 1.22067 1.02160 0.99152 0.97004 0.83857 1.23352 0.87699 0.81030 0.76103 1.90552 1.17378 1.75017 1.59878 1.86463 1.43732 1.36816 1.61124 1.19804 0.88062 0.82692 0.89217 0.97669 1.21196 1.03441 1.26781 1.08190 0.92046 1.25730 0.95460 0.95703 1.00792 1.70165 1.12632 1.31088 1.39211 0.85313 0.78853 0.77639 0.78353 1.19923 1.20039 1.19042 1.22398 0.96055 1.00364 0.96276 1.23248 1.06139 1.01279 0.92742 1.22278 0.93944 0.99513 1.00261 0.94006 0.90485 0.93771 0.90145 0.90064 0.92059 0.84073 0.89209 0.92361 0.90382 0.87880 0.89566 0.91756 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 8.09 71.98 0.58 -2.34 16 2 C -0.09 -2.19 2.70 -52.18 -0.14 -2.33 16 3 C -0.11 -1.83 9.85 71.98 0.71 -1.12 16 4 C -0.13 -2.91 9.52 30.60 0.29 -2.62 16 5 C -0.18 -5.62 6.02 -11.53 -0.07 -5.69 16 6 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 7 C 0.47 20.32 6.94 71.24 0.49 20.82 16 8 O -0.54 -25.15 10.16 21.96 0.22 -24.93 16 9 O -0.36 -18.30 9.84 -51.34 -0.51 -18.80 16 10 C 0.26 14.23 2.25 29.85 0.07 14.30 16 11 H 0.01 0.35 6.91 -2.39 -0.02 0.33 16 12 C -0.56 -32.47 8.88 25.60 0.23 -32.24 16 13 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 14 C 0.03 1.40 5.30 84.65 0.45 1.85 16 15 N -0.90 -51.09 11.44 21.45 0.25 -50.85 16 16 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.13 -6.72 4.48 -10.77 -0.05 -6.77 16 21 C -0.20 -8.56 9.80 30.60 0.30 -8.26 16 22 C -0.12 -5.83 9.06 30.62 0.28 -5.56 16 23 H 0.04 1.39 7.26 -2.39 -0.02 1.37 16 24 H 0.08 1.66 7.92 -2.38 -0.02 1.65 16 25 H 0.04 1.41 7.02 -2.39 -0.02 1.39 16 26 H 0.08 1.02 7.90 -2.39 -0.02 1.00 16 27 H 0.08 1.10 7.92 -2.39 -0.02 1.09 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.14 2.23 8.05 -2.39 -0.02 2.21 16 30 H 0.09 2.29 8.05 -2.39 -0.02 2.27 16 31 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 32 H 0.08 4.09 8.11 -2.39 -0.02 4.07 16 33 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.09 3.89 5.37 -2.39 -0.01 3.88 16 35 H 0.06 3.34 8.05 -2.38 -0.02 3.33 16 36 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 Total: -1.00 -66.14 296.45 6.18 -59.96 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.05 Total: 19.01 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.14 Total: -29.96 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.25 Total: -50.85 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.28 Total: -43.73 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.14 6.18 -59.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123466277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.437 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds