Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.56094 * 2 1 4 4 C 1.52996 * 117.50179 * 214.31003 * 2 1 3 5 5 C 1.52999 * 117.50036 * 145.68535 * 2 1 3 6 6 H 1.09001 * 117.51674 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.50335 * 214.98020 * 5 2 1 8 8 O 1.20833 * 119.99747 * 359.97438 * 7 5 2 9 9 O 1.34230 * 120.00262 * 179.70793 * 7 5 2 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 5 11 11 H 1.09003 * 109.47004 * 30.00649 * 10 9 7 12 12 C 1.50698 * 109.46838 * 150.00117 * 10 9 7 13 13 H 1.08006 * 120.00272 * 0.02562 * 12 10 9 14 14 C 1.37878 * 120.00303 * 179.97438 * 12 10 9 15 15 N 1.31513 * 119.99520 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00298 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47031 * 90.00183 * 16 14 12 18 18 H 1.48498 * 109.47380 * 210.00196 * 16 14 12 19 19 H 1.48501 * 109.47283 * 330.00736 * 16 14 12 20 20 C 1.52998 * 109.47569 * 270.00626 * 10 9 7 21 21 C 1.52995 * 117.49989 * 128.62238 * 20 10 9 22 22 C 1.52998 * 117.49689 * 59.99807 * 20 10 9 23 23 H 1.09005 * 109.47559 * 274.30733 * 1 2 3 24 24 H 1.09002 * 109.47231 * 34.31361 * 1 2 3 25 25 H 1.09006 * 109.47338 * 154.31294 * 1 2 3 26 26 H 1.09000 * 109.46923 * 205.68925 * 3 2 1 27 27 H 1.08997 * 109.47147 * 325.68968 * 3 2 1 28 28 H 1.09006 * 109.47061 * 85.68637 * 3 2 1 29 29 H 1.08998 * 117.50262 * 145.01959 * 4 2 1 30 30 H 1.09002 * 117.51888 * 359.97438 * 4 2 1 31 31 H 0.97008 * 120.00169 * 179.97438 * 15 14 12 32 32 H 1.09003 * 115.54426 * 274.33005 * 20 10 9 33 33 H 1.09001 * 117.49998 * 0.02562 * 21 20 10 34 34 H 1.09006 * 117.50005 * 145.01993 * 21 20 10 35 35 H 1.09007 * 117.49714 * 214.97925 * 22 20 10 36 36 H 1.08996 * 117.50324 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 1.6115 -1.8588 1.2682 7 6 3.5292 -0.7811 1.4609 8 8 3.9703 0.3423 1.4011 9 8 4.1880 -1.7249 2.1516 10 6 5.4233 -1.3247 2.8013 11 1 5.3647 -0.2714 3.0758 12 6 5.6311 -2.1561 4.0408 13 1 4.9073 -2.9102 4.3130 14 6 6.7457 -1.9549 4.8271 15 7 7.6272 -1.0370 4.4955 16 14 7.0036 -2.9859 6.3632 17 1 7.7749 -4.2066 6.0163 18 1 7.7556 -2.1947 7.3700 19 1 5.6853 -3.3763 6.9245 20 6 6.5962 -1.5371 1.8420 21 6 7.5481 -0.3604 1.6185 22 6 6.5713 -0.7744 0.5160 23 1 -0.3634 0.0772 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1823 1.3084 -0.4455 27 1 1.5811 2.0743 -0.5792 28 1 2.2771 1.7414 1.0248 29 1 3.1715 -0.8751 -1.2682 30 1 1.6116 -1.8589 -1.2680 31 1 8.4113 -0.8951 5.0489 32 1 7.0247 -2.5394 1.8383 33 1 7.3390 0.5650 2.1551 34 1 8.6033 -0.5883 1.4677 35 1 6.9840 -1.2747 -0.3602 36 1 5.7197 -0.1210 0.3271 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123466278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = -45.357113 kcal Electronic energy + Delta-G solvation = -17539.105059 eV Core-core repulsion = 14796.935696 eV Total energy + Delta-G solvation = -2742.169363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03340 -37.85900 -35.95362 -34.77280 -32.62782 -29.54352 -27.83488 -27.34629 -24.48054 -22.89645 -21.22493 -20.45632 -19.22903 -18.72747 -17.07429 -16.48417 -15.65057 -15.00062 -14.53096 -14.32800 -13.92246 -13.65234 -13.48387 -12.65566 -12.63008 -12.37748 -11.92466 -11.78106 -11.42886 -11.24767 -11.16577 -11.00228 -10.92677 -10.44039 -10.24082 -10.06444 -9.81553 -9.71356 -9.43142 -9.19431 -8.98720 -8.62575 -8.40145 -6.13324 -4.20996 2.86461 3.26261 3.31914 3.34942 3.57481 3.94343 4.35870 4.73218 4.88459 4.97236 5.12240 5.14229 5.21892 5.62043 5.68421 5.70621 5.85071 5.94477 5.96009 6.08262 6.09945 6.14591 6.20289 6.29369 6.42550 6.55346 6.65513 6.75571 7.02165 7.18411 7.31008 7.44586 7.66329 7.89123 8.15980 8.70498 8.95107 9.43658 10.93450 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.006818 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.122049 B = 4105.690043 C = 4562.952613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.160 4.160 6 H 0.127 0.873 7 C 0.483 3.517 8 O -0.514 6.514 9 O -0.350 6.350 10 C 0.249 3.751 11 H 0.048 0.952 12 C -0.527 4.527 13 H 0.068 0.932 14 C 0.068 3.932 15 N -0.873 5.873 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.229 4.229 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 0.929 -8.669 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.161 4.161 4 C -0.183 4.183 5 C -0.180 4.180 6 H 0.145 0.855 7 C 0.327 3.673 8 O -0.405 6.405 9 O -0.266 6.266 10 C 0.197 3.803 11 H 0.066 0.934 12 C -0.565 4.565 13 H 0.086 0.914 14 C -0.136 4.136 15 N -0.510 5.510 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.266 4.266 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.996 1.332 -8.582 12.504 hybrid contribution 0.527 -0.638 0.912 1.231 sum -8.469 0.695 -7.670 11.447 Atomic orbital electron populations 1.21383 0.91572 1.02004 1.02202 1.21646 0.94629 0.91999 1.01642 1.21382 0.99628 0.92336 1.02763 1.23225 1.02899 1.01089 0.91119 1.21924 0.96209 1.04552 0.95268 0.85490 1.22256 0.84604 0.83621 0.76857 1.90565 1.68009 1.22568 1.59378 1.86472 1.38856 1.41227 1.60026 1.20190 0.74117 0.97627 0.88409 0.93437 1.20925 1.08203 1.20957 1.06453 0.91363 1.24879 0.95294 0.95449 0.97931 1.70051 1.11129 1.31547 1.38225 0.86364 0.78379 0.79899 0.82006 1.20457 1.21043 1.19697 1.22586 1.00375 0.96060 0.94242 1.22349 0.94364 0.99826 0.99559 1.23264 1.03950 1.06458 0.92906 0.91931 0.91764 0.92315 0.91575 0.93474 0.91249 0.88207 0.87846 0.92664 0.89430 0.89362 0.90841 0.91138 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.85 37.16 0.37 -0.79 16 2 C -0.10 -1.31 2.70 -154.51 -0.42 -1.72 16 3 C -0.10 -1.49 8.09 37.16 0.30 -1.19 16 4 C -0.15 -1.89 9.52 -26.73 -0.25 -2.14 16 5 C -0.16 -2.52 6.02 -91.77 -0.55 -3.08 16 6 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 7 C 0.48 10.11 6.94 36.00 0.25 10.36 16 8 O -0.51 -11.53 10.16 -18.76 -0.19 -11.72 16 9 O -0.35 -8.46 9.85 -39.26 -0.39 -8.85 16 10 C 0.25 6.64 2.25 -27.89 -0.06 6.58 16 11 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 12 C -0.53 -14.84 8.88 -34.44 -0.31 -15.14 16 13 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 15 N -0.87 -24.43 11.44 55.43 0.63 -23.79 16 16 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 C -0.11 -2.83 4.47 -90.62 -0.41 -3.23 16 21 C -0.12 -2.89 9.05 -26.73 -0.24 -3.13 16 22 C -0.23 -4.98 9.80 -26.73 -0.26 -5.25 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 25 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 26 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 27 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 28 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 29 H 0.10 1.36 8.05 -51.93 -0.42 0.94 16 30 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.09 2.25 8.11 -51.93 -0.42 1.83 16 33 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -29.33 296.44 -7.70 -37.03 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.52 Total: 3.74 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.68 Total: -16.96 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.63 Total: -23.79 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.58 Total: -20.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.33 -7.70 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123466278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.325 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds