Wall clock time and date at job start Sun Mar 29 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 115.56094 * 2 1 4 4 C 1.52996 * 117.50179 * 214.31003 * 2 1 3 5 5 C 1.52999 * 117.50036 * 145.68535 * 2 1 3 6 6 H 1.09001 * 117.51674 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.50335 * 214.98020 * 5 2 1 8 8 O 1.20833 * 119.99747 * 359.97438 * 7 5 2 9 9 O 1.34230 * 120.00262 * 179.70793 * 7 5 2 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 5 11 11 H 1.09003 * 109.47004 * 30.00649 * 10 9 7 12 12 C 1.50698 * 109.46838 * 150.00117 * 10 9 7 13 13 H 1.08006 * 120.00272 * 0.02562 * 12 10 9 14 14 C 1.37878 * 120.00303 * 179.97438 * 12 10 9 15 15 N 1.31513 * 119.99520 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00298 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47031 * 90.00183 * 16 14 12 18 18 H 1.48498 * 109.47380 * 210.00196 * 16 14 12 19 19 H 1.48501 * 109.47283 * 330.00736 * 16 14 12 20 20 C 1.52998 * 109.47569 * 270.00626 * 10 9 7 21 21 C 1.52995 * 117.49989 * 128.62238 * 20 10 9 22 22 C 1.52998 * 117.49689 * 59.99807 * 20 10 9 23 23 H 1.09005 * 109.47559 * 274.30733 * 1 2 3 24 24 H 1.09002 * 109.47231 * 34.31361 * 1 2 3 25 25 H 1.09006 * 109.47338 * 154.31294 * 1 2 3 26 26 H 1.09000 * 109.46923 * 205.68925 * 3 2 1 27 27 H 1.08997 * 109.47147 * 325.68968 * 3 2 1 28 28 H 1.09006 * 109.47061 * 85.68637 * 3 2 1 29 29 H 1.08998 * 117.50262 * 145.01959 * 4 2 1 30 30 H 1.09002 * 117.51888 * 359.97438 * 4 2 1 31 31 H 0.97008 * 120.00169 * 179.97438 * 15 14 12 32 32 H 1.09003 * 115.54426 * 274.33005 * 20 10 9 33 33 H 1.09001 * 117.49998 * 0.02562 * 21 20 10 34 34 H 1.09006 * 117.50005 * 145.01993 * 21 20 10 35 35 H 1.09007 * 117.49714 * 214.97925 * 22 20 10 36 36 H 1.08996 * 117.50324 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 1.6115 -1.8588 1.2682 7 6 3.5292 -0.7811 1.4609 8 8 3.9703 0.3423 1.4011 9 8 4.1880 -1.7249 2.1516 10 6 5.4233 -1.3247 2.8013 11 1 5.3647 -0.2714 3.0758 12 6 5.6311 -2.1561 4.0408 13 1 4.9073 -2.9102 4.3130 14 6 6.7457 -1.9549 4.8271 15 7 7.6272 -1.0370 4.4955 16 14 7.0036 -2.9859 6.3632 17 1 7.7749 -4.2066 6.0163 18 1 7.7556 -2.1947 7.3700 19 1 5.6853 -3.3763 6.9245 20 6 6.5962 -1.5371 1.8420 21 6 7.5481 -0.3604 1.6185 22 6 6.5713 -0.7744 0.5160 23 1 -0.3634 0.0772 1.0248 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1823 1.3084 -0.4455 27 1 1.5811 2.0743 -0.5792 28 1 2.2771 1.7414 1.0248 29 1 3.1715 -0.8751 -1.2682 30 1 1.6116 -1.8589 -1.2680 31 1 8.4113 -0.8951 5.0489 32 1 7.0247 -2.5394 1.8383 33 1 7.3390 0.5650 2.1551 34 1 8.6033 -0.5883 1.4677 35 1 6.9840 -1.2747 -0.3602 36 1 5.7197 -0.1210 0.3271 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123466278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:46 Heat of formation + Delta-G solvation = -60.438800 kcal Electronic energy + Delta-G solvation = -17539.759050 eV Core-core repulsion = 14796.935696 eV Total energy + Delta-G solvation = -2742.823354 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63411 -39.32101 -37.67903 -36.59231 -34.72826 -30.74114 -29.74805 -28.33544 -26.09131 -24.72746 -23.09177 -21.97123 -21.07315 -20.02402 -18.83222 -18.39912 -17.32876 -16.88707 -16.33469 -15.72710 -15.51924 -14.91834 -14.66849 -14.40284 -14.18581 -13.57769 -13.36969 -13.26892 -13.01354 -12.85102 -12.80277 -12.67427 -12.28837 -12.20983 -12.10931 -11.80300 -11.36172 -11.19654 -11.03396 -10.97940 -10.63053 -10.61570 -10.41841 -8.23268 -6.40489 1.30225 1.40972 1.42345 1.53040 1.99419 2.41494 2.74827 3.03942 3.20676 3.60640 3.82948 3.84793 4.08596 4.16470 4.20025 4.28870 4.42489 4.62664 4.75326 4.76609 4.82829 4.83587 5.00422 5.05296 5.08260 5.10467 5.11579 5.24755 5.31770 5.37804 5.46359 5.51712 5.59078 5.86388 6.17928 6.63458 7.07452 7.30625 8.83065 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.006818 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.122049 B = 4105.690043 C = 4562.952613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.104 4.104 4 C -0.126 4.126 5 C -0.185 4.185 6 H 0.144 0.856 7 C 0.473 3.527 8 O -0.537 6.537 9 O -0.365 6.365 10 C 0.255 3.745 11 H 0.006 0.994 12 C -0.559 4.559 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.975 3.025 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.197 4.197 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -0.014 -9.844 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.161 4.161 4 C -0.162 4.162 5 C -0.204 4.204 6 H 0.161 0.839 7 C 0.318 3.682 8 O -0.428 6.428 9 O -0.281 6.281 10 C 0.202 3.798 11 H 0.023 0.977 12 C -0.596 4.596 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.531 5.531 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.234 4.234 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.194 0.397 -9.776 14.130 hybrid contribution 0.866 -0.256 1.241 1.535 sum -9.328 0.141 -8.535 12.644 Atomic orbital electron populations 1.21425 0.88574 1.03977 1.02761 1.21851 0.96584 0.90647 0.99932 1.21334 0.99343 0.94119 1.01283 1.23409 1.02934 1.01305 0.88598 1.22064 0.93977 1.07338 0.97011 0.83865 1.23354 0.85779 0.82903 0.76147 1.90553 1.68972 1.23290 1.60010 1.86464 1.38393 1.42473 1.60807 1.19804 0.75937 0.94879 0.89152 0.97657 1.21198 1.08883 1.21539 1.07992 0.92058 1.25728 0.94671 0.96453 1.00834 1.70162 1.11318 1.32349 1.39269 0.85308 0.78406 0.78427 0.77988 1.19413 1.20271 1.19333 1.22386 1.00449 0.95958 0.96304 1.22267 0.95303 0.98182 1.00230 1.23248 1.02807 1.04667 0.92694 0.92066 0.90060 0.90144 0.93765 0.90483 0.94009 0.89198 0.84073 0.92360 0.90407 0.91749 0.89248 0.87879 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.85 71.98 0.71 -1.13 16 2 C -0.09 -2.19 2.70 -52.18 -0.14 -2.33 16 3 C -0.10 -2.92 8.09 71.98 0.58 -2.34 16 4 C -0.13 -2.90 9.52 30.59 0.29 -2.61 16 5 C -0.19 -5.63 6.02 -11.54 -0.07 -5.70 16 6 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 7 C 0.47 20.33 6.94 71.23 0.49 20.82 16 8 O -0.54 -25.15 10.16 21.94 0.22 -24.93 16 9 O -0.36 -18.30 9.85 -51.41 -0.51 -18.81 16 10 C 0.26 14.23 2.25 29.85 0.07 14.30 16 11 H 0.01 0.36 6.91 -2.39 -0.02 0.34 16 12 C -0.56 -32.48 8.88 25.60 0.23 -32.25 16 13 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 14 C 0.03 1.40 5.30 84.66 0.45 1.85 16 15 N -0.90 -51.09 11.44 21.45 0.25 -50.84 16 16 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C -0.13 -6.73 4.47 -10.80 -0.05 -6.78 16 21 C -0.12 -5.83 9.05 30.59 0.28 -5.55 16 22 C -0.20 -8.56 9.80 30.59 0.30 -8.26 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.08 1.11 7.92 -2.39 -0.02 1.09 16 25 H 0.08 1.02 7.90 -2.38 -0.02 1.00 16 26 H 0.04 1.41 7.02 -2.39 -0.02 1.39 16 27 H 0.08 1.66 7.92 -2.39 -0.02 1.65 16 28 H 0.04 1.39 7.26 -2.38 -0.02 1.37 16 29 H 0.09 2.28 8.05 -2.39 -0.02 2.27 16 30 H 0.14 2.23 8.05 -2.39 -0.02 2.21 16 31 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 32 H 0.08 4.08 8.11 -2.39 -0.02 4.06 16 33 H 0.06 3.35 8.05 -2.39 -0.02 3.33 16 34 H 0.09 3.91 8.14 -2.38 -0.02 3.89 16 35 H 0.10 3.80 8.14 -2.38 -0.02 3.78 16 36 H 0.09 3.90 5.37 -2.39 -0.01 3.89 16 Total: -1.00 -66.14 296.44 6.18 -59.96 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.05 Total: 19.02 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.14 Total: -29.97 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.25 Total: -50.84 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.28 Total: -43.74 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.14 6.18 -59.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123466278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds