Wall clock time and date at job start Sun Mar 29 2020 23:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47249 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99876 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99786 * 180.02562 * 13 12 11 16 16 H 1.08990 * 115.52654 * 34.41615 * 15 13 12 17 17 C 1.52998 * 117.45905 * 179.91780 * 15 13 12 18 18 H 1.08998 * 119.30124 * 356.28842 * 17 15 13 19 19 C 1.54269 * 118.19797 * 201.21329 * 17 15 13 20 20 C 1.54825 * 104.20915 * 272.19770 * 19 17 15 21 21 C 1.54886 * 102.74914 * 37.92086 * 20 19 17 22 22 C 1.53005 * 117.45776 * 248.92287 * 15 13 12 23 23 H 1.08995 * 119.29905 * 3.70303 * 22 15 13 24 24 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 27 27 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 28 28 H 1.09004 * 109.47066 * 299.99735 * 11 10 9 29 29 H 1.09000 * 109.47665 * 59.99543 * 11 10 9 30 30 H 0.97000 * 119.99601 * 0.02562 * 12 11 10 31 31 H 1.08997 * 110.48362 * 30.88686 * 19 17 15 32 32 H 1.08997 * 110.48753 * 153.53256 * 19 17 15 33 33 H 1.08999 * 110.73575 * 279.61143 * 20 19 17 34 34 H 1.09002 * 110.93308 * 156.31550 * 20 19 17 35 35 H 1.08995 * 110.48770 * 203.40927 * 21 20 19 36 36 H 1.08996 * 110.60065 * 80.81295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 7 6.3487 -3.4602 -0.0305 13 6 7.6965 -3.4601 -0.0370 14 8 8.3028 -2.4098 -0.0374 15 6 8.4499 -4.7653 -0.0439 16 1 7.9794 -5.5763 -0.5995 17 6 9.9784 -4.6975 -0.0531 18 1 10.4689 -3.7261 -0.1159 19 6 10.7597 -5.9305 -0.5520 20 6 10.9352 -6.8064 0.7126 21 6 9.5850 -6.6192 1.4480 22 6 9.2316 -5.1353 1.2183 23 1 9.1720 -4.4864 2.0920 24 1 -0.4850 0.8400 0.0004 25 1 3.8645 -0.3622 -0.0119 26 1 3.8524 -3.0450 0.8712 27 1 3.8450 -3.0400 -0.9087 28 1 5.8755 -1.6174 -0.9140 29 1 5.8837 -1.6221 0.8659 30 1 5.8636 -4.3002 -0.0306 31 1 10.1862 -6.4646 -1.3095 32 1 11.7309 -5.6326 -0.9470 33 1 11.7614 -6.4419 1.3229 34 1 11.0871 -7.8519 0.4441 35 1 9.6989 -6.8238 2.5126 36 1 8.8203 -7.2647 1.0161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125349407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:34 Heat of formation + Delta-G solvation = -7.401328 kcal Electronic energy + Delta-G solvation = -16216.271493 eV Core-core repulsion = 13508.040768 eV Total energy + Delta-G solvation = -2708.230725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51225 -38.54058 -35.83253 -33.92433 -32.11856 -31.36932 -28.56823 -28.34674 -24.68680 -22.86031 -21.50016 -21.00681 -20.09920 -19.90960 -17.92865 -17.32111 -16.05928 -15.49315 -15.21956 -14.97824 -14.36729 -13.85390 -13.76744 -13.56385 -13.44169 -13.03194 -12.64926 -11.80874 -11.68051 -11.55171 -11.51443 -11.45720 -11.18866 -10.96631 -10.85973 -10.36725 -10.17168 -10.13356 -9.75376 -9.62700 -9.04396 -8.89421 -7.31617 -5.81191 -3.18663 2.42275 3.07480 3.37707 3.41482 3.45213 3.50451 4.23493 4.39616 4.44168 4.56640 4.85450 4.90019 4.92106 5.08442 5.13330 5.26944 5.33179 5.39044 5.43543 5.50949 5.60183 5.64512 5.69399 5.74283 5.79282 5.95756 5.97473 6.08139 6.38249 6.57636 6.61926 7.55011 7.92299 8.25496 8.36989 9.14580 9.86913 10.05285 11.36694 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062309 B = 0.003715 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.267938 B = 7535.042922 C = 7793.300461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.107 3.893 12 N -0.718 5.718 13 C 0.541 3.459 14 O -0.543 6.543 15 C -0.161 4.161 16 H 0.121 0.879 17 C -0.132 4.132 18 H 0.122 0.878 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.139 4.139 23 H 0.114 0.886 24 H 0.261 0.739 25 H 0.363 0.637 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.402 0.598 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -14.870 0.930 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.017 4.017 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.420 6.420 15 C -0.182 4.182 16 H 0.139 0.861 17 C -0.150 4.150 18 H 0.140 0.860 19 C -0.134 4.134 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.158 4.158 23 H 0.132 0.868 24 H 0.071 0.929 25 H 0.196 0.804 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.493 -14.174 0.932 25.763 hybrid contribution 0.091 0.911 -0.036 0.916 sum 21.584 -13.263 0.897 25.349 Atomic orbital electron populations 1.69702 1.05117 1.26009 1.57113 1.24675 0.95270 0.97331 1.01647 0.86538 0.79285 0.84749 0.77941 1.20903 1.20173 1.21558 1.19012 0.80223 0.94889 1.43744 0.89078 1.42538 1.04165 1.01864 1.91351 1.20728 0.87620 0.90248 0.99313 1.21610 0.92495 0.85136 1.02420 1.45816 1.05994 1.10227 1.74841 1.19568 0.82167 0.89664 0.75963 1.90699 1.68317 1.33205 1.49808 1.22364 0.94558 0.97546 1.03778 0.86144 1.23249 0.90546 1.00477 1.00754 0.86029 1.21990 0.99814 0.94084 0.97538 1.22687 0.97496 0.99673 0.96244 1.22003 0.97070 0.93306 1.00984 1.23245 1.02962 0.97731 0.91848 0.86751 0.92921 0.80378 0.94859 0.94929 0.91346 0.91382 0.76357 0.91177 0.90858 0.91160 0.91151 0.90849 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.32 27.74 -169.99 -4.72 17.61 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.28 -6.60 6.51 56.52 0.37 -6.23 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -18.08 5.41 -59.91 -0.32 -18.40 16 10 C 0.15 2.80 6.37 -4.05 -0.03 2.77 16 11 C 0.11 1.76 5.79 -4.04 -0.02 1.74 16 12 N -0.72 -9.59 5.56 -60.29 -0.33 -9.92 16 13 C 0.54 7.65 7.61 -10.99 -0.08 7.56 16 14 O -0.54 -9.86 16.32 5.55 0.09 -9.77 16 15 C -0.16 -1.66 5.74 -91.77 -0.53 -2.19 16 16 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.13 -1.29 6.39 -89.54 -0.57 -1.86 16 18 H 0.12 1.40 7.78 -51.93 -0.40 0.99 16 19 C -0.10 -0.70 6.62 -25.11 -0.17 -0.87 16 20 C -0.12 -0.77 6.90 -24.77 -0.17 -0.94 16 21 C -0.10 -0.66 6.63 -25.07 -0.17 -0.83 16 22 C -0.14 -1.29 6.64 -89.53 -0.59 -1.88 16 23 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 25 H 0.36 8.59 5.52 -40.82 -0.23 8.36 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -33.47 300.23 -8.21 -41.68 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.64 Total: 6.46 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.58 Total: -3.62 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.12 Total: -56.88 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.72 Total: 17.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.47 -8.21 -41.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125349407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.279 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds