Wall clock time and date at job start Sun Mar 29 2020 23:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47249 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99876 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99786 * 180.02562 * 13 12 11 16 16 H 1.08990 * 115.52654 * 34.41615 * 15 13 12 17 17 C 1.52998 * 117.45905 * 179.91780 * 15 13 12 18 18 H 1.08998 * 119.30124 * 356.28842 * 17 15 13 19 19 C 1.54269 * 118.19797 * 201.21329 * 17 15 13 20 20 C 1.54825 * 104.20915 * 272.19770 * 19 17 15 21 21 C 1.54886 * 102.74914 * 37.92086 * 20 19 17 22 22 C 1.53005 * 117.45776 * 248.92287 * 15 13 12 23 23 H 1.08995 * 119.29905 * 3.70303 * 22 15 13 24 24 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 27 27 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 28 28 H 1.09004 * 109.47066 * 299.99735 * 11 10 9 29 29 H 1.09000 * 109.47665 * 59.99543 * 11 10 9 30 30 H 0.97000 * 119.99601 * 0.02562 * 12 11 10 31 31 H 1.08997 * 110.48362 * 30.88686 * 19 17 15 32 32 H 1.08997 * 110.48753 * 153.53256 * 19 17 15 33 33 H 1.08999 * 110.73575 * 279.61143 * 20 19 17 34 34 H 1.09002 * 110.93308 * 156.31550 * 20 19 17 35 35 H 1.08995 * 110.48770 * 203.40927 * 21 20 19 36 36 H 1.08996 * 110.60065 * 80.81295 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 7 6.3487 -3.4602 -0.0305 13 6 7.6965 -3.4601 -0.0370 14 8 8.3028 -2.4098 -0.0374 15 6 8.4499 -4.7653 -0.0439 16 1 7.9794 -5.5763 -0.5995 17 6 9.9784 -4.6975 -0.0531 18 1 10.4689 -3.7261 -0.1159 19 6 10.7597 -5.9305 -0.5520 20 6 10.9352 -6.8064 0.7126 21 6 9.5850 -6.6192 1.4480 22 6 9.2316 -5.1353 1.2183 23 1 9.1720 -4.4864 2.0920 24 1 -0.4850 0.8400 0.0004 25 1 3.8645 -0.3622 -0.0119 26 1 3.8524 -3.0450 0.8712 27 1 3.8450 -3.0400 -0.9087 28 1 5.8755 -1.6174 -0.9140 29 1 5.8837 -1.6221 0.8659 30 1 5.8636 -4.3002 -0.0306 31 1 10.1862 -6.4646 -1.3095 32 1 11.7309 -5.6326 -0.9470 33 1 11.7614 -6.4419 1.3229 34 1 11.0871 -7.8519 0.4441 35 1 9.6989 -6.8238 2.5126 36 1 8.8203 -7.2647 1.0161 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125349407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:34 Heat of formation + Delta-G solvation = -30.794767 kcal Electronic energy + Delta-G solvation = -16217.285909 eV Core-core repulsion = 13508.040768 eV Total energy + Delta-G solvation = -2709.245141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43709 -39.50109 -37.44760 -35.55400 -33.52220 -32.69495 -29.96894 -29.12416 -26.07136 -24.34368 -23.10467 -21.69783 -21.07080 -20.64044 -19.85314 -18.49112 -17.27146 -16.70438 -16.49912 -16.06714 -15.73153 -15.61258 -15.08372 -14.82171 -14.50070 -14.02753 -13.79712 -13.47397 -13.23641 -12.74918 -12.64410 -12.45931 -12.27054 -12.10575 -11.97454 -11.84664 -11.67993 -11.15024 -11.05771 -11.05584 -10.64132 -10.19978 -9.38853 -8.07130 -5.42734 1.37058 1.37870 1.39533 1.46803 1.97899 2.45115 2.69585 3.24591 3.43288 3.69948 3.76066 3.77342 3.90178 4.10515 4.15681 4.22070 4.26516 4.48604 4.51932 4.53684 4.69543 4.83904 4.96488 5.00980 5.05911 5.16913 5.23749 5.23899 5.28662 5.32977 5.51887 5.70375 6.15951 6.48292 7.01011 7.16195 7.75415 7.93133 9.13718 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062309 B = 0.003715 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.267938 B = 7535.042922 C = 7793.300461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.255 1.255 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.151 3.849 11 C 0.122 3.878 12 N -0.707 5.707 13 C 0.537 3.463 14 O -0.589 6.589 15 C -0.162 4.162 16 H 0.149 0.851 17 C -0.141 4.141 18 H 0.097 0.903 19 C -0.092 4.092 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.134 4.134 23 H 0.100 0.900 24 H 0.260 0.740 25 H 0.366 0.634 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.419 0.581 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.202 -16.298 0.879 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.180 1.180 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.406 5.406 10 C 0.024 3.976 11 C -0.003 4.003 12 N -0.359 5.359 13 C 0.325 3.675 14 O -0.469 6.469 15 C -0.183 4.183 16 H 0.166 0.834 17 C -0.160 4.160 18 H 0.115 0.885 19 C -0.130 4.130 20 C -0.157 4.157 21 C -0.129 4.129 22 C -0.153 4.153 23 H 0.118 0.882 24 H 0.069 0.931 25 H 0.199 0.801 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.256 0.744 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 23.411 -15.666 0.881 28.183 hybrid contribution -0.492 1.269 -0.005 1.361 sum 22.919 -14.397 0.876 27.080 Atomic orbital electron populations 1.69868 1.07021 1.26879 1.59216 1.25487 0.96124 1.01226 1.02283 0.85447 0.78605 0.79766 0.78219 1.20314 1.17969 1.21894 1.19015 0.82160 0.93845 1.41961 0.91789 1.42563 1.02822 1.03920 1.91280 1.20823 0.88569 0.88262 0.99899 1.21241 0.91067 0.86383 1.01610 1.45668 1.05947 1.09891 1.74364 1.20253 0.82096 0.90556 0.74615 1.90678 1.69159 1.35216 1.51864 1.22368 0.94567 0.96064 1.05274 0.83374 1.23315 0.90315 1.00663 1.01679 0.88511 1.22019 0.99716 0.92939 0.98301 1.22692 0.97043 1.00479 0.95468 1.22049 0.97727 0.91313 1.01822 1.23347 1.01746 0.99342 0.90891 0.88176 0.93121 0.80057 0.93959 0.94028 0.92271 0.92239 0.74427 0.90156 0.90388 0.91208 0.89291 0.90029 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.70 13.97 21.65 0.30 -62.40 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 45.94 27.74 68.60 1.90 47.84 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.25 -11.28 6.51 99.48 0.65 -10.64 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.76 -35.64 5.41 -343.47 -1.86 -37.50 16 10 C 0.15 5.46 6.37 86.38 0.55 6.01 16 11 C 0.12 3.86 5.79 86.38 0.50 4.36 16 12 N -0.71 -17.74 5.56 -463.04 -2.57 -20.32 16 13 C 0.54 14.68 7.61 87.66 0.67 15.34 16 14 O -0.59 -21.47 16.32 -3.04 -0.05 -21.52 16 15 C -0.16 -3.04 5.74 -11.54 -0.07 -3.11 16 16 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.14 -2.60 6.39 -10.09 -0.06 -2.67 16 18 H 0.10 2.27 7.78 -2.39 -0.02 2.25 16 19 C -0.09 -1.11 6.62 31.65 0.21 -0.90 16 20 C -0.12 -1.11 6.90 31.86 0.22 -0.89 16 21 C -0.09 -0.98 6.63 31.67 0.21 -0.77 16 22 C -0.13 -2.26 6.64 -10.09 -0.07 -2.33 16 23 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 24 H 0.26 15.81 8.31 -92.71 -0.77 15.03 16 25 H 0.37 16.69 5.52 -92.71 -0.51 16.18 16 26 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.42 7.76 8.47 -92.71 -0.79 6.97 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.64 300.23 0.95 -71.68 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.28 Total: 22.93 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 3.51 Total: -0.73 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -4.13 Total: -120.21 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Total: -72.64 0.95 -71.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125349407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.890 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds