Wall clock time and date at job start Sun Mar 29 2020 22:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47302 * 270.00553 * 3 2 1 5 5 H 1.48505 * 109.46745 * 30.00575 * 3 2 1 6 6 H 1.48500 * 109.47037 * 149.99977 * 3 2 1 7 7 C 1.38818 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99412 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99380 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46944 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99874 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00399 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99687 * 179.97438 * 13 12 11 16 16 H 1.09006 * 115.57905 * 325.76618 * 15 13 12 17 17 C 1.53119 * 117.51226 * 111.53295 * 15 13 12 18 18 C 1.52462 * 117.51260 * 179.97438 * 15 13 12 19 19 C 1.53251 * 128.58160 * 134.94919 * 18 15 13 20 20 C 1.53896 * 86.88092 * 194.88817 * 19 18 15 21 21 C 1.53251 * 128.58257 * 10.15321 * 18 15 13 22 22 H 0.96996 * 120.00327 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00460 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.47642 * 60.00197 * 10 9 7 25 25 H 1.09004 * 109.46968 * 299.99667 * 10 9 7 26 26 H 1.09002 * 109.47320 * 59.99251 * 11 10 9 27 27 H 1.09004 * 109.46874 * 299.99551 * 11 10 9 28 28 H 0.96998 * 119.99795 * 359.97438 * 12 11 10 29 29 H 1.08994 * 117.51498 * 0.02562 * 17 15 13 30 30 H 1.09002 * 117.51417 * 214.89501 * 17 15 13 31 31 H 1.08999 * 113.64523 * 80.39686 * 19 18 15 32 32 H 1.09004 * 113.73437 * 309.39879 * 19 18 15 33 33 H 1.09003 * 113.58404 * 139.57153 * 20 19 18 34 34 H 1.08997 * 113.59104 * 270.39694 * 20 19 18 35 35 H 1.09002 * 113.65186 * 50.61191 * 21 18 15 36 36 H 1.09002 * 113.64479 * 279.60394 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0006 13 6 1.1224 -7.2557 -0.0005 14 8 -0.0904 -7.2557 -0.0004 15 6 1.8759 -8.5608 -0.0004 16 1 2.8152 -8.5620 -0.5536 17 6 1.7980 -9.4225 1.2629 18 6 1.0571 -9.8468 0.0003 19 6 1.2573 -11.1078 -0.8473 20 6 -0.1646 -11.5166 -0.4237 21 6 -0.4510 -10.0197 -0.2101 22 1 -0.4850 0.8400 0.0004 23 1 0.3555 -2.3881 0.0002 24 1 2.6848 -3.7146 0.8894 25 1 2.6847 -3.7145 -0.8906 26 1 0.4374 -4.7618 -0.8913 27 1 0.4369 -4.7622 0.8887 28 1 2.7663 -6.0885 -0.0002 29 1 1.2014 -9.0455 2.0935 30 1 2.6859 -9.9904 1.5406 31 1 2.0343 -11.7712 -0.4673 32 1 1.3552 -10.9082 -1.9144 33 1 -0.7486 -11.9618 -1.2292 34 1 -0.1947 -12.1018 0.4954 35 1 -0.8291 -9.5157 -1.0996 36 1 -1.0436 -9.8108 0.6806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134444297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:29 Heat of formation + Delta-G solvation = 17.529828 kcal Electronic energy + Delta-G solvation = -16237.905889 eV Core-core repulsion = 13530.756260 eV Total energy + Delta-G solvation = -2707.149629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35467 -38.44527 -35.62533 -33.85590 -33.69616 -31.17994 -27.93271 -25.82110 -24.55581 -23.25493 -22.93863 -21.41911 -20.06410 -18.50679 -17.30013 -17.00485 -15.83807 -15.40533 -15.30572 -14.93440 -14.50339 -14.17129 -13.66865 -13.17314 -12.96530 -12.73992 -12.48855 -12.17107 -11.71665 -11.63214 -11.39101 -11.10149 -10.82244 -10.80318 -10.50002 -10.24251 -10.11919 -9.92657 -9.81913 -9.53506 -8.96891 -8.78567 -6.99330 -5.79509 -3.10267 2.60172 3.22779 3.42394 3.47258 3.49266 3.63671 4.24674 4.44987 4.57222 4.62226 4.62527 4.73724 5.04657 5.19246 5.38346 5.46637 5.50424 5.51549 5.58732 5.65105 5.70473 5.78846 5.80108 5.97691 6.02101 6.14964 6.17085 6.26651 6.52149 6.71543 6.77808 7.65834 7.69174 8.37577 8.40910 9.49330 10.04276 10.39110 11.43136 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.075876 B = 0.003496 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.934476 B = 8006.373459 C = 8216.597765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.721 5.721 13 C 0.539 3.461 14 O -0.537 6.537 15 C -0.178 4.178 16 H 0.122 0.878 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.099 4.099 20 C -0.143 4.143 21 C -0.083 4.083 22 H 0.257 0.743 23 H 0.386 0.614 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.399 0.601 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -22.525 0.071 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.372 5.372 13 C 0.325 3.675 14 O -0.414 6.414 15 C -0.200 4.200 16 H 0.140 0.860 17 C -0.160 4.160 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.180 4.180 21 C -0.120 4.120 22 H 0.066 0.934 23 H 0.220 0.780 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.233 0.767 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.942 -22.366 0.076 22.711 hybrid contribution 0.794 1.139 -0.030 1.389 sum 4.736 -21.227 0.046 21.749 Atomic orbital electron populations 1.69666 1.05163 1.25855 1.57212 1.24785 0.95566 0.97828 1.02675 0.86144 0.78607 0.83583 0.77550 1.21620 1.21676 1.20698 1.19199 0.91041 0.83872 1.43418 0.91028 1.42198 1.06012 0.99590 1.89698 1.20756 0.93504 0.85696 0.98383 1.21564 0.95431 0.81761 1.02457 1.45890 1.10415 1.05843 1.75040 1.19591 0.87574 0.84229 0.76144 1.90693 1.13769 1.87482 1.49490 1.22169 1.02148 0.90575 1.05069 0.86025 1.22782 1.02023 1.00461 0.90701 1.22270 0.96624 0.93569 1.00324 1.22504 0.97596 0.94254 0.99252 1.22820 0.96620 0.97108 1.01456 1.22326 0.92624 0.94353 1.02686 0.93350 0.78008 0.95806 0.95825 0.91365 0.91394 0.76683 0.88027 0.87701 0.91349 0.89620 0.91301 0.90223 0.89361 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.90 9.99 -15.05 -0.15 -7.05 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.84 5.60 -59.90 -0.34 -19.17 16 10 C 0.14 2.89 6.37 -4.04 -0.03 2.86 16 11 C 0.11 1.97 5.79 -4.04 -0.02 1.95 16 12 N -0.72 -10.22 5.56 -60.29 -0.33 -10.55 16 13 C 0.54 7.94 7.61 -10.98 -0.08 7.85 16 14 O -0.54 -9.90 15.14 5.56 0.08 -9.82 16 15 C -0.18 -1.93 6.19 -91.98 -0.57 -2.50 16 16 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.12 -1.15 10.23 -26.97 -0.28 -1.42 16 18 C -0.13 -1.31 2.87 -154.82 -0.44 -1.75 16 19 C -0.10 -0.81 8.10 -26.13 -0.21 -1.02 16 20 C -0.14 -1.19 8.08 -25.80 -0.21 -1.39 16 21 C -0.08 -0.92 6.47 -26.14 -0.17 -1.09 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.39 10.54 7.67 -40.82 -0.31 10.23 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.40 4.49 8.47 -40.82 -0.35 4.14 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -32.67 305.48 -8.24 -40.91 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.70 Total: 8.41 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.26 Total: -4.00 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.05 Total: -57.50 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.67 -8.24 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134444297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.437 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds