Wall clock time and date at job start Sun Mar 29 2020 22:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47302 * 270.00553 * 3 2 1 5 5 H 1.48505 * 109.46745 * 30.00575 * 3 2 1 6 6 H 1.48500 * 109.47037 * 149.99977 * 3 2 1 7 7 C 1.38818 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00222 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99412 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99380 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46944 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99874 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00399 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99687 * 179.97438 * 13 12 11 16 16 H 1.09006 * 115.57905 * 325.76618 * 15 13 12 17 17 C 1.53119 * 117.51226 * 111.53295 * 15 13 12 18 18 C 1.52462 * 117.51260 * 179.97438 * 15 13 12 19 19 C 1.53251 * 128.58160 * 134.94919 * 18 15 13 20 20 C 1.53896 * 86.88092 * 194.88817 * 19 18 15 21 21 C 1.53251 * 128.58257 * 10.15321 * 18 15 13 22 22 H 0.96996 * 120.00327 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00460 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.47642 * 60.00197 * 10 9 7 25 25 H 1.09004 * 109.46968 * 299.99667 * 10 9 7 26 26 H 1.09002 * 109.47320 * 59.99251 * 11 10 9 27 27 H 1.09004 * 109.46874 * 299.99551 * 11 10 9 28 28 H 0.96998 * 119.99795 * 359.97438 * 12 11 10 29 29 H 1.08994 * 117.51498 * 0.02562 * 17 15 13 30 30 H 1.09002 * 117.51417 * 214.89501 * 17 15 13 31 31 H 1.08999 * 113.64523 * 80.39686 * 19 18 15 32 32 H 1.09004 * 113.73437 * 309.39879 * 19 18 15 33 33 H 1.09003 * 113.58404 * 139.57153 * 20 19 18 34 34 H 1.08997 * 113.59104 * 270.39694 * 20 19 18 35 35 H 1.09002 * 113.65186 * 50.61191 * 21 18 15 36 36 H 1.09002 * 113.64479 * 279.60394 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0006 13 6 1.1224 -7.2557 -0.0005 14 8 -0.0904 -7.2557 -0.0004 15 6 1.8759 -8.5608 -0.0004 16 1 2.8152 -8.5620 -0.5536 17 6 1.7980 -9.4225 1.2629 18 6 1.0571 -9.8468 0.0003 19 6 1.2573 -11.1078 -0.8473 20 6 -0.1646 -11.5166 -0.4237 21 6 -0.4510 -10.0197 -0.2101 22 1 -0.4850 0.8400 0.0004 23 1 0.3555 -2.3881 0.0002 24 1 2.6848 -3.7146 0.8894 25 1 2.6847 -3.7145 -0.8906 26 1 0.4374 -4.7618 -0.8913 27 1 0.4369 -4.7622 0.8887 28 1 2.7663 -6.0885 -0.0002 29 1 1.2014 -9.0455 2.0935 30 1 2.6859 -9.9904 1.5406 31 1 2.0343 -11.7712 -0.4673 32 1 1.3552 -10.9082 -1.9144 33 1 -0.7486 -11.9618 -1.2292 34 1 -0.1947 -12.1018 0.4954 35 1 -0.8291 -9.5157 -1.0996 36 1 -1.0436 -9.8108 0.6806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134444297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:29 Heat of formation + Delta-G solvation = -4.934811 kcal Electronic energy + Delta-G solvation = -16238.880029 eV Core-core repulsion = 13530.756260 eV Total energy + Delta-G solvation = -2708.123769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34339 -39.47486 -37.28410 -35.47320 -34.60696 -33.11235 -29.63881 -26.57827 -26.13085 -24.51450 -23.90924 -23.00002 -21.19415 -19.46374 -19.16088 -18.14788 -17.02525 -16.68025 -16.55296 -16.07799 -15.87735 -15.53137 -15.14979 -14.98545 -14.72635 -13.72517 -13.27535 -13.13415 -13.05832 -12.94170 -12.67432 -12.54576 -12.41702 -12.30434 -12.09932 -11.87611 -11.28317 -11.01905 -11.00793 -10.83468 -10.60360 -10.13789 -9.09046 -7.98453 -5.30393 1.47576 1.49372 1.50289 1.58739 2.05591 2.56648 2.79421 3.35725 3.42199 3.69486 3.79378 3.89862 3.96704 3.98677 4.08072 4.18207 4.22077 4.52350 4.55079 4.66285 4.81237 4.87122 4.90956 4.99549 5.05934 5.10312 5.10899 5.17603 5.38046 5.41282 5.47630 5.53217 6.22157 6.56323 7.25408 7.28250 7.99568 8.22922 9.25348 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.075876 B = 0.003496 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.934476 B = 8006.373459 C = 8216.597765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.533 3.467 14 O -0.582 6.582 15 C -0.183 4.183 16 H 0.153 0.847 17 C -0.107 4.107 18 C -0.139 4.139 19 C -0.086 4.086 20 C -0.133 4.133 21 C -0.099 4.099 22 H 0.253 0.747 23 H 0.373 0.627 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.417 0.583 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -24.045 0.107 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.004 3.996 12 N -0.362 5.362 13 C 0.321 3.679 14 O -0.462 6.462 15 C -0.204 4.204 16 H 0.170 0.830 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.170 4.170 21 C -0.136 4.136 22 H 0.061 0.939 23 H 0.205 0.795 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.105 0.895 30 H 0.157 0.843 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.693 -23.929 0.112 24.848 hybrid contribution -0.069 1.548 -0.030 1.550 sum 6.624 -22.381 0.082 23.341 Atomic orbital electron populations 1.69839 1.06899 1.26357 1.59087 1.25701 0.96451 1.01554 1.03243 0.85035 0.77712 0.78820 0.77527 1.21220 1.22252 1.18951 1.19668 0.91763 0.84842 1.41870 0.89841 1.42445 1.05749 1.01149 1.89808 1.20842 0.93551 0.84045 0.99260 1.21116 0.94807 0.82898 1.00786 1.45720 1.11181 1.04521 1.74746 1.20390 0.87321 0.85468 0.74748 1.90681 1.15995 1.88167 1.51379 1.22204 1.02893 0.88229 1.07060 0.82982 1.22897 1.02673 0.99343 0.89508 1.22497 0.95714 0.94156 1.01582 1.22481 0.97821 0.92980 0.99068 1.22805 0.97011 0.94853 1.02307 1.22335 0.93552 0.96940 1.00815 0.93857 0.79513 0.94431 0.94442 0.93159 0.93171 0.74596 0.89498 0.84274 0.89038 0.89344 0.90505 0.89083 0.91695 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.98 46.00 29.55 68.60 2.03 48.02 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.83 5.60 -343.44 -1.92 -40.75 16 10 C 0.15 5.85 6.37 86.38 0.55 6.40 16 11 C 0.13 4.60 5.79 86.38 0.50 5.10 16 12 N -0.71 -19.43 5.56 -463.05 -2.57 -22.01 16 13 C 0.53 15.48 7.61 87.66 0.67 16.15 16 14 O -0.58 -22.22 15.14 -3.02 -0.05 -22.27 16 15 C -0.18 -3.56 6.19 -11.68 -0.07 -3.63 16 16 H 0.15 2.03 8.14 -2.38 -0.02 2.01 16 17 C -0.11 -1.73 10.23 30.44 0.31 -1.42 16 18 C -0.14 -2.61 2.87 -52.39 -0.15 -2.76 16 19 C -0.09 -1.15 8.10 30.98 0.25 -0.90 16 20 C -0.13 -1.97 8.08 31.20 0.25 -1.72 16 21 C -0.10 -2.24 6.47 30.98 0.20 -2.04 16 22 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.37 20.97 7.67 -92.71 -0.71 20.26 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.42 8.43 8.47 -92.71 -0.79 7.64 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.73 8.05 -2.39 -0.02 1.72 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.64 305.48 1.16 -70.48 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.42 Total: 28.80 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 3.82 Total: -1.98 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -4.21 Total: -123.05 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.64 1.16 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134444297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.544 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds