Wall clock time and date at job start Sun Mar 29 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48505 * 109.46700 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47581 * 120.00015 * 3 2 1 7 7 C 1.38817 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 H 1.08997 * 115.55243 * 34.42440 * 15 13 12 17 17 C 1.53000 * 117.50158 * 248.75065 * 15 13 12 18 18 C 1.52998 * 117.49874 * 180.08793 * 15 13 12 19 19 H 1.08994 * 117.49992 * 0.02562 * 18 15 13 20 20 C 1.53002 * 117.50244 * 215.00147 * 18 15 13 21 21 C 1.53000 * 117.49753 * 128.61914 * 20 18 15 22 22 C 1.52996 * 60.00298 * 252.51409 * 21 20 18 23 23 H 0.97001 * 119.99359 * 0.02562 * 1 2 3 24 24 H 0.97004 * 120.00567 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47129 * 59.99499 * 10 9 7 26 26 H 1.08998 * 109.46845 * 300.00306 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 29 29 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 30 30 H 1.08997 * 117.49657 * 359.97438 * 17 15 13 31 31 H 1.08997 * 117.49954 * 145.02360 * 17 15 13 32 32 H 1.08996 * 115.55185 * 274.33314 * 20 18 15 33 33 H 1.08999 * 117.49716 * 0.02562 * 21 20 18 34 34 H 1.09006 * 117.49370 * 145.02053 * 21 20 18 35 35 H 1.08991 * 117.50172 * 252.50983 * 22 21 20 36 36 H 1.09004 * 117.51475 * 107.47594 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0885 0.0006 13 6 1.1222 -7.2556 0.0015 14 8 -0.0906 -7.2556 0.0024 15 6 1.8757 -8.5607 0.0003 16 1 2.8141 -8.5624 0.5548 17 6 1.8010 -9.4184 -1.2645 18 6 1.0535 -9.8511 -0.0007 19 1 -0.0322 -9.7560 -0.0008 20 6 1.6116 -11.0449 0.7767 21 6 0.6824 -11.7314 1.7799 22 6 1.8407 -10.8651 2.2788 23 1 -0.4849 0.8401 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 2.6846 -3.7146 0.8905 26 1 2.6846 -3.7146 -0.8894 27 1 0.4366 -4.7622 -0.8886 28 1 0.4374 -4.7618 0.8914 29 1 2.7661 -6.0885 0.0002 30 1 1.2066 -9.0389 -2.0956 31 1 2.6902 -9.9846 -1.5419 32 1 2.3163 -11.6729 0.2317 33 1 -0.3265 -11.3327 1.8858 34 1 0.7757 -12.8113 1.8949 35 1 2.6959 -11.3751 2.7220 36 1 1.5942 -9.8962 2.7130 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135084418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:20 Heat of formation + Delta-G solvation = 16.650762 kcal Electronic energy + Delta-G solvation = -16013.601329 eV Core-core repulsion = 13306.413581 eV Total energy + Delta-G solvation = -2707.187748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03586 -38.08138 -35.77223 -34.96853 -33.80398 -31.21504 -28.04157 -25.07034 -23.75414 -23.01846 -22.58382 -21.44240 -20.45248 -19.69973 -17.44024 -17.11010 -16.05183 -15.52990 -15.31939 -14.89040 -14.55589 -14.05605 -13.76993 -13.21876 -13.11269 -12.91735 -12.48587 -11.87780 -11.64067 -11.47284 -11.18308 -11.10299 -11.07783 -10.81711 -10.79571 -10.28422 -10.15377 -9.95812 -9.83082 -9.61587 -8.97693 -8.81146 -6.99729 -5.79573 -3.10422 2.54931 3.14574 3.42768 3.45933 3.48074 3.50288 3.77430 4.33040 4.53431 4.56862 4.62795 4.78710 4.82744 5.04641 5.06230 5.21306 5.40342 5.46052 5.50080 5.55000 5.64390 5.75430 5.78404 5.89077 5.89301 5.96766 6.07533 6.15755 6.50269 6.70675 6.75843 7.64883 7.65777 8.35297 8.38539 9.49173 10.04004 10.38841 11.43004 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062512 B = 0.003350 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.807872 B = 8357.394556 C = 8375.964934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.719 5.719 13 C 0.538 3.462 14 O -0.544 6.544 15 C -0.184 4.184 16 H 0.124 0.876 17 C -0.144 4.144 18 C -0.092 4.092 19 H 0.119 0.881 20 C -0.127 4.127 21 C -0.175 4.175 22 C -0.177 4.177 23 H 0.257 0.743 24 H 0.386 0.614 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.400 0.600 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -22.610 0.829 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.370 5.370 13 C 0.324 3.676 14 O -0.421 6.421 15 C -0.205 4.205 16 H 0.142 0.858 17 C -0.182 4.182 18 C -0.110 4.110 19 H 0.137 0.863 20 C -0.146 4.146 21 C -0.212 4.212 22 C -0.214 4.214 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.234 0.766 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.189 -22.438 0.833 23.046 hybrid contribution 0.719 1.049 0.051 1.273 sum 5.908 -21.389 0.884 22.208 Atomic orbital electron populations 1.69661 1.05167 1.25978 1.57111 1.24786 0.95569 0.97832 1.02639 0.86215 0.78490 0.83269 0.77866 1.21182 1.21595 1.21175 1.19153 0.91014 0.83875 1.43576 0.91071 1.42189 1.06009 0.99573 1.89718 1.20753 0.93486 0.85677 0.98411 1.21586 0.95468 0.81739 1.02523 1.45862 1.10463 1.05826 1.74801 1.19630 0.87524 0.84448 0.76007 1.90700 1.13933 1.87568 1.49921 1.22309 1.02437 0.90484 1.05259 0.85845 1.23056 1.02811 1.01167 0.91150 1.21826 0.98891 0.91372 0.98915 0.86278 1.21772 1.02948 0.98637 0.91194 1.22992 0.96037 0.98675 1.03483 1.22988 1.00374 1.02025 0.96039 0.93292 0.78002 0.95807 0.95782 0.91331 0.91312 0.76582 0.88081 0.87775 0.87432 0.88517 0.88779 0.88799 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 10 C 0.14 2.88 6.37 -4.04 -0.03 2.86 16 11 C 0.11 1.95 5.79 -4.04 -0.02 1.93 16 12 N -0.72 -10.13 5.56 -60.29 -0.33 -10.46 16 13 C 0.54 7.89 7.61 -10.99 -0.08 7.81 16 14 O -0.54 -10.23 16.26 5.56 0.09 -10.13 16 15 C -0.18 -1.92 5.83 -91.77 -0.54 -2.46 16 16 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -1.29 9.96 -26.69 -0.27 -1.56 16 18 C -0.09 -0.91 5.38 -90.58 -0.49 -1.40 16 19 H 0.12 1.43 7.67 -51.93 -0.40 1.03 16 20 C -0.13 -1.03 5.87 -90.62 -0.53 -1.56 16 21 C -0.17 -1.37 10.25 -26.73 -0.27 -1.64 16 22 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.40 4.44 8.47 -40.82 -0.35 4.10 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -32.80 311.73 -8.60 -41.41 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.68 Total: 9.24 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.75 Total: -5.21 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.05 Total: -57.37 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.80 -8.60 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135084418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.058 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds