Wall clock time and date at job start Sun Mar 29 2020 22:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47365 * 2 1 4 4 C 1.46904 * 110.99979 * 299.98428 * 3 2 1 5 5 C 1.50696 * 109.47000 * 288.82447 * 4 3 2 6 6 H 1.07994 * 120.00346 * 4.80468 * 5 4 3 7 7 C 1.37879 * 119.99861 * 184.79925 * 5 4 3 8 8 N 1.31510 * 120.00167 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.46893 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.47441 * 209.99672 * 9 7 5 12 12 H 1.48494 * 109.47515 * 330.00327 * 9 7 5 13 13 C 1.46899 * 111.00082 * 63.93702 * 3 2 1 14 14 C 1.50701 * 109.46930 * 76.13360 * 13 3 2 15 15 C 1.38553 * 120.43317 * 95.77101 * 14 13 3 16 16 C 1.38697 * 118.45367 * 180.02562 * 15 14 13 17 17 C 1.38151 * 119.22477 * 359.97438 * 16 15 14 18 18 N 1.31906 * 120.79563 * 0.02562 * 17 16 15 19 19 C 1.32056 * 121.68598 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.64832 * 179.97438 * 19 18 17 21 21 H 1.08996 * 109.47272 * 185.46963 * 1 2 3 22 22 H 1.08995 * 109.47065 * 305.47405 * 1 2 3 23 23 H 1.09006 * 109.46676 * 65.47241 * 1 2 3 24 24 H 1.09001 * 109.47192 * 239.99934 * 2 1 3 25 25 H 1.09001 * 109.47373 * 120.00192 * 2 1 3 26 26 H 1.08996 * 109.47135 * 48.82584 * 4 3 2 27 27 H 1.09004 * 109.46778 * 168.82782 * 4 3 2 28 28 H 0.97003 * 120.00060 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47118 * 316.13986 * 13 3 2 30 30 H 1.08999 * 109.47343 * 196.13022 * 13 3 2 31 31 H 1.08005 * 120.77149 * 0.04203 * 15 14 13 32 32 H 1.08009 * 120.38773 * 180.02562 * 16 15 14 33 33 H 1.07998 * 119.60145 * 180.27504 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5490 2.1098 -1.1879 5 6 2.2661 1.5931 -2.4085 6 1 2.9404 0.7538 -2.3238 7 6 2.0614 2.1920 -3.6334 8 7 2.6868 1.7409 -4.6987 9 14 0.8955 3.6442 -3.7798 10 1 1.6482 4.9066 -3.5670 11 1 0.2848 3.6542 -5.1333 12 1 -0.1731 3.5264 -2.7554 13 6 1.6271 2.0821 1.2320 14 6 2.5046 1.6256 2.3689 15 6 3.6262 2.3561 2.7268 16 6 4.4051 1.8981 3.7791 17 6 4.0404 0.7368 4.4326 18 7 2.9659 0.0648 4.0666 19 6 2.2005 0.4701 3.0697 20 9 1.1096 -0.2504 2.7291 21 1 -0.3633 -1.0229 0.0980 22 1 -0.3633 0.5964 0.8369 23 1 -0.3633 0.4266 -0.9350 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.4761 1.9573 -1.3051 27 1 1.7540 3.1737 -1.0692 28 1 2.5430 2.1625 -5.5604 29 1 0.5864 1.8545 1.4623 30 1 1.7420 3.1572 1.0934 31 1 3.8877 3.2613 2.1989 32 1 5.2859 2.4433 4.0846 33 1 4.6399 0.3770 5.2557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138788908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:31 Heat of formation + Delta-G solvation = 6.255595 kcal Electronic energy + Delta-G solvation = -17072.709538 eV Core-core repulsion = 14241.610717 eV Total energy + Delta-G solvation = -2831.098822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.92593 -40.01896 -37.43027 -33.18290 -32.40690 -31.27507 -29.61609 -27.75710 -25.25506 -23.66462 -23.00436 -21.87758 -19.33935 -17.92522 -17.25785 -16.79659 -16.25086 -15.57214 -14.98333 -14.60556 -14.53756 -13.95289 -13.60160 -13.29239 -13.05866 -12.79253 -12.52513 -12.37417 -11.88115 -11.55101 -11.31092 -11.07194 -10.67472 -10.48680 -10.12042 -9.93835 -9.78273 -9.60046 -9.31117 -8.81537 -8.57266 -7.39657 -6.06036 -4.02885 0.95469 1.17622 3.25764 3.34050 3.34915 3.58408 3.68574 4.39992 4.55982 4.74138 4.80507 4.94978 5.00473 5.27162 5.40661 5.57255 5.69940 5.80783 5.85491 5.93683 5.99615 6.08473 6.23469 6.40436 6.50124 6.65354 6.78118 6.89734 7.03877 7.56645 7.64982 7.84994 7.97801 8.63931 9.03411 9.55280 11.07266 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.006728 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.517008 B = 4160.858077 C = 4486.180147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.053 3.947 3 N -0.519 5.519 4 C 0.159 3.841 5 C -0.505 4.505 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.082 3.918 14 C -0.129 4.129 15 C -0.035 4.035 16 C -0.184 4.184 17 C 0.121 3.879 18 N -0.518 5.518 19 C 0.306 3.694 20 F -0.108 7.108 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.059 0.941 26 H -0.002 1.002 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 1.594 16.421 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.075 4.075 3 N -0.241 5.241 4 C 0.033 3.967 5 C -0.543 4.543 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.047 4.047 14 C -0.133 4.133 15 C -0.061 4.061 16 C -0.204 4.204 17 C -0.035 4.035 18 N -0.232 5.232 19 C 0.153 3.847 20 F -0.087 7.087 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.016 0.984 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.206 0.827 16.596 16.618 hybrid contribution -1.393 1.368 -0.717 2.080 sum -1.187 2.195 15.880 16.075 Atomic orbital electron populations 1.22355 0.99083 1.01267 1.01737 1.22155 0.92450 0.90695 1.02234 1.62260 1.59230 1.02062 1.00597 1.20284 0.94519 0.93471 0.88443 1.20990 1.26269 1.17254 0.89834 0.90231 1.24887 0.95710 0.96983 0.95747 1.69889 1.42851 1.41698 0.99496 0.86889 0.81844 0.83595 0.77573 1.20194 1.21204 1.19320 1.21070 0.95312 0.99224 0.89104 1.20753 0.98904 0.95103 0.98522 1.21468 0.91319 0.99140 0.94152 1.22155 1.01771 0.98574 0.97901 1.22417 0.91576 0.91315 0.98230 1.66973 1.06791 1.34329 1.15101 1.18017 0.85331 0.88777 0.92598 1.91598 1.49866 1.77243 1.90034 0.92959 0.93360 0.91738 0.89719 0.92308 0.98410 0.96008 0.92672 0.93207 0.89841 0.83665 0.84116 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 8.66 37.16 0.32 -2.99 16 2 C 0.05 1.04 5.37 -3.83 -0.02 1.02 16 3 N -0.52 -10.69 4.58 -237.52 -1.09 -11.78 16 4 C 0.16 3.74 3.62 -4.98 -0.02 3.72 16 5 C -0.51 -14.17 9.21 -34.44 -0.32 -14.49 16 6 H 0.08 2.46 7.53 -52.49 -0.40 2.06 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 9 Si 0.87 21.16 27.38 -169.99 -4.65 16.51 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.24 6.68 56.52 0.38 -5.86 16 13 C 0.08 1.37 4.91 -4.98 -0.02 1.34 16 14 C -0.13 -1.96 5.27 -104.40 -0.55 -2.51 16 15 C -0.03 -0.43 9.83 -39.30 -0.39 -0.82 16 16 C -0.18 -1.91 10.11 -39.44 -0.40 -2.31 16 17 C 0.12 1.37 11.18 -17.55 -0.20 1.18 16 18 N -0.52 -7.73 10.37 -13.59 -0.14 -7.87 16 19 C 0.31 4.89 7.45 -17.35 -0.13 4.76 16 20 F -0.11 -1.80 13.38 2.25 0.03 -1.77 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.81 5.63 -51.93 -0.29 0.51 16 23 H 0.06 1.25 6.47 -51.93 -0.34 0.92 16 24 H 0.08 1.86 7.13 -51.93 -0.37 1.49 16 25 H 0.06 1.10 4.99 -51.93 -0.26 0.84 16 26 H 0.00 -0.04 5.29 -51.93 -0.27 -0.31 16 27 H 0.02 0.51 6.86 -51.93 -0.36 0.15 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.05 0.82 5.43 -51.93 -0.28 0.54 16 30 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 31 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -31.41 269.17 -6.65 -38.06 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.81 Total: -1.30 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.82 Total: -9.25 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.45 Total: -46.31 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.65 Total: 16.51 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.41 -6.65 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138788908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.313 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds