Wall clock time and date at job start Sun Mar 29 2020 22:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47365 * 2 1 4 4 C 1.46904 * 110.99979 * 299.98428 * 3 2 1 5 5 C 1.50696 * 109.47000 * 288.82447 * 4 3 2 6 6 H 1.07994 * 120.00346 * 4.80468 * 5 4 3 7 7 C 1.37879 * 119.99861 * 184.79925 * 5 4 3 8 8 N 1.31510 * 120.00167 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.46893 * 89.99903 * 9 7 5 11 11 H 1.48496 * 109.47441 * 209.99672 * 9 7 5 12 12 H 1.48494 * 109.47515 * 330.00327 * 9 7 5 13 13 C 1.46899 * 111.00082 * 63.93702 * 3 2 1 14 14 C 1.50701 * 109.46930 * 76.13360 * 13 3 2 15 15 C 1.38553 * 120.43317 * 95.77101 * 14 13 3 16 16 C 1.38697 * 118.45367 * 180.02562 * 15 14 13 17 17 C 1.38151 * 119.22477 * 359.97438 * 16 15 14 18 18 N 1.31906 * 120.79563 * 0.02562 * 17 16 15 19 19 C 1.32056 * 121.68598 * 359.97438 * 18 17 16 20 20 F 1.35099 * 119.64832 * 179.97438 * 19 18 17 21 21 H 1.08996 * 109.47272 * 185.46963 * 1 2 3 22 22 H 1.08995 * 109.47065 * 305.47405 * 1 2 3 23 23 H 1.09006 * 109.46676 * 65.47241 * 1 2 3 24 24 H 1.09001 * 109.47192 * 239.99934 * 2 1 3 25 25 H 1.09001 * 109.47373 * 120.00192 * 2 1 3 26 26 H 1.08996 * 109.47135 * 48.82584 * 4 3 2 27 27 H 1.09004 * 109.46778 * 168.82782 * 4 3 2 28 28 H 0.97003 * 120.00060 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47118 * 316.13986 * 13 3 2 30 30 H 1.08999 * 109.47343 * 196.13022 * 13 3 2 31 31 H 1.08005 * 120.77149 * 0.04203 * 15 14 13 32 32 H 1.08009 * 120.38773 * 180.02562 * 16 15 14 33 33 H 1.07998 * 119.60145 * 180.27504 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5490 2.1098 -1.1879 5 6 2.2661 1.5931 -2.4085 6 1 2.9404 0.7538 -2.3238 7 6 2.0614 2.1920 -3.6334 8 7 2.6868 1.7409 -4.6987 9 14 0.8955 3.6442 -3.7798 10 1 1.6482 4.9066 -3.5670 11 1 0.2848 3.6542 -5.1333 12 1 -0.1731 3.5264 -2.7554 13 6 1.6271 2.0821 1.2320 14 6 2.5046 1.6256 2.3689 15 6 3.6262 2.3561 2.7268 16 6 4.4051 1.8981 3.7791 17 6 4.0404 0.7368 4.4326 18 7 2.9659 0.0648 4.0666 19 6 2.2005 0.4701 3.0697 20 9 1.1096 -0.2504 2.7291 21 1 -0.3633 -1.0229 0.0980 22 1 -0.3633 0.5964 0.8369 23 1 -0.3633 0.4266 -0.9350 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.4761 1.9573 -1.3051 27 1 1.7540 3.1737 -1.0692 28 1 2.5430 2.1625 -5.5604 29 1 0.5864 1.8545 1.4623 30 1 1.7420 3.1572 1.0934 31 1 3.8877 3.2613 2.1989 32 1 5.2859 2.4433 4.0846 33 1 4.6399 0.3770 5.2557 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138788908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:31 Heat of formation + Delta-G solvation = -15.998774 kcal Electronic energy + Delta-G solvation = -17073.674560 eV Core-core repulsion = 14241.610717 eV Total energy + Delta-G solvation = -2832.063844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.09338 -41.04018 -38.96945 -34.86117 -33.97287 -32.31884 -31.31298 -29.38234 -26.68273 -24.97227 -24.36226 -23.27019 -20.95555 -19.01625 -18.88596 -18.29368 -17.55971 -16.78669 -16.38826 -16.26484 -15.92372 -15.49593 -14.79705 -14.53517 -14.50820 -14.12840 -14.06216 -13.70372 -13.34692 -13.13337 -12.83430 -12.59233 -12.43568 -12.20510 -11.89662 -11.59398 -11.47263 -10.84454 -10.74643 -10.63083 -9.85560 -9.00833 -8.26005 -6.28834 -0.04321 0.19991 1.35996 1.38081 1.48500 2.35980 2.58008 2.67923 3.06886 3.32645 3.56451 3.81505 3.88848 4.04944 4.17777 4.32163 4.41813 4.53789 4.59693 4.62165 4.74147 4.85618 4.94123 5.04206 5.08307 5.18795 5.23805 5.37898 5.55820 5.69166 5.97883 6.30967 6.63183 6.68572 6.76708 7.33890 8.91060 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.006728 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.517008 B = 4160.858077 C = 4486.180147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.511 4.511 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.249 1.249 13 C 0.085 3.915 14 C -0.148 4.148 15 C -0.040 4.040 16 C -0.166 4.166 17 C 0.121 3.879 18 N -0.543 5.543 19 C 0.281 3.719 20 F -0.122 7.122 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.000 1.000 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.184 0.816 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 3.501 18.590 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.070 4.070 3 N -0.257 5.257 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.771 3.229 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.173 1.173 13 C -0.043 4.043 14 C -0.152 4.152 15 C -0.066 4.066 16 C -0.185 4.185 17 C -0.035 4.035 18 N -0.258 5.258 19 C 0.128 3.872 20 F -0.102 7.102 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.018 0.982 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.201 0.799 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.187 2.727 18.798 18.996 hybrid contribution -1.222 0.691 -1.280 1.900 sum -1.035 3.418 17.518 17.879 Atomic orbital electron populations 1.22245 0.97449 1.02494 1.01269 1.22025 0.93770 0.90395 1.00839 1.62108 1.59947 1.02323 1.01349 1.20041 0.93805 0.93980 0.87955 1.21219 1.25623 1.15914 0.92207 0.95029 1.25850 0.97663 1.00414 0.95109 1.70059 1.45070 1.43772 1.00284 0.85710 0.79739 0.79531 0.77940 1.18676 1.21107 1.17274 1.21080 0.95963 0.99574 0.87678 1.20673 1.00147 0.95851 0.98542 1.21816 0.90543 0.99446 0.94811 1.22608 1.02052 0.97856 0.96027 1.23202 0.90478 0.91171 0.98650 1.67018 1.08033 1.35493 1.15255 1.18210 0.85803 0.89392 0.93817 1.91543 1.50648 1.77651 1.90311 0.91353 0.91899 0.93502 0.93300 0.91380 0.98199 0.94804 0.92517 0.92975 0.88409 0.81997 0.79891 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 8.66 71.98 0.62 -5.63 16 2 C 0.06 2.33 5.37 86.30 0.46 2.80 16 3 N -0.53 -22.02 4.58 -905.38 -4.15 -26.16 16 4 C 0.17 7.89 3.62 85.55 0.31 8.20 16 5 C -0.51 -29.52 9.21 25.60 0.24 -29.29 16 6 H 0.03 2.07 7.53 -2.91 -0.02 2.05 16 7 C 0.01 0.37 5.47 84.66 0.46 0.84 16 8 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 9 Si 0.95 43.34 27.38 68.60 1.88 45.21 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.25 -10.54 6.68 99.48 0.66 -9.87 16 13 C 0.08 2.74 4.91 85.56 0.42 3.16 16 14 C -0.15 -4.29 5.27 -19.72 -0.10 -4.40 16 15 C -0.04 -0.89 9.83 22.45 0.22 -0.67 16 16 C -0.17 -2.76 10.11 22.36 0.23 -2.54 16 17 C 0.12 2.34 11.18 84.66 0.95 3.29 16 18 N -0.54 -15.35 10.37 -196.92 -2.04 -17.39 16 19 C 0.28 8.71 7.45 84.73 0.63 9.34 16 20 F -0.12 -4.06 13.38 44.97 0.60 -3.46 16 21 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.06 2.04 5.63 -2.39 -0.01 2.03 16 23 H 0.05 1.81 6.47 -2.38 -0.02 1.80 16 24 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 25 H 0.07 2.62 4.99 -2.39 -0.01 2.60 16 26 H 0.00 0.02 5.29 -2.39 -0.01 0.01 16 27 H 0.03 1.51 6.86 -2.38 -0.02 1.49 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.05 1.64 5.43 -2.39 -0.01 1.63 16 30 H 0.10 2.81 7.57 -2.39 -0.02 2.79 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -70.76 269.17 2.11 -68.65 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.08 Total: 7.41 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.44 Total: -14.90 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -5.89 Total: -102.92 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.60 Total: -3.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.21 kcal Total: -70.76 2.11 -68.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138788908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.653 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds