Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00161 * 2 1 4 4 C 1.39963 * 120.00185 * 180.02562 * 2 1 3 5 5 C 1.40287 * 125.85508 * 5.00102 * 4 2 1 6 6 C 1.36041 * 107.81187 * 180.02562 * 5 4 2 7 7 N 1.39455 * 126.20276 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00047 * 0.02562 * 7 6 5 9 9 O 1.21292 * 119.99984 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99757 * 179.97438 * 8 7 6 11 11 C 1.50702 * 109.47168 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99606 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00627 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99499 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47449 * 89.99396 * 15 13 11 17 17 H 1.48500 * 109.47346 * 209.99892 * 15 13 11 18 18 H 1.48506 * 109.46837 * 329.99731 * 15 13 11 19 19 N 1.35831 * 107.59594 * 0.26165 * 6 5 4 20 20 H 0.96996 * 126.02937 * 179.70572 * 19 6 5 21 21 N 1.31225 * 125.86111 * 185.03826 * 4 2 1 22 22 H 1.08996 * 109.46825 * 239.99512 * 1 2 3 23 23 H 1.08997 * 109.46868 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47031 * 119.99959 * 1 2 3 25 25 H 1.08998 * 109.47467 * 270.00269 * 3 2 1 26 26 H 1.09001 * 109.47032 * 30.00251 * 3 2 1 27 27 H 1.09000 * 109.47197 * 150.00331 * 3 2 1 28 28 H 1.08004 * 126.09487 * 0.02562 * 5 4 2 29 29 H 0.97004 * 119.99588 * 179.72659 * 7 6 5 30 30 H 1.08996 * 109.47390 * 299.99902 * 10 8 7 31 31 H 1.09004 * 109.47662 * 59.99777 * 10 8 7 32 32 H 0.97002 * 119.99797 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1649 -1.2121 -0.0005 5 6 1.5949 -2.4900 -0.1002 6 6 2.6051 -3.4004 -0.0633 7 7 2.4680 -4.7864 -0.1343 8 6 1.2436 -5.3373 -0.2518 9 8 0.2609 -4.6276 -0.2954 10 6 1.0955 -6.8349 -0.3291 11 6 -0.3637 -7.1896 -0.4552 12 1 -1.1094 -6.4086 -0.4768 13 6 -0.7471 -8.5111 -0.5419 14 7 0.1608 -9.4622 -0.5151 15 14 -2.5558 -8.9507 -0.6990 16 1 -2.9289 -9.0064 -2.1353 17 1 -2.7997 -10.2748 -0.0725 18 1 -3.3769 -7.9202 -0.0139 19 7 3.7711 -2.7149 0.0616 20 1 4.6581 -3.1034 0.1176 21 7 3.4667 -1.3481 0.0928 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 2.3792 1.5834 -1.0276 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 0.5416 -2.7117 -0.1902 29 1 3.2542 -5.3537 -0.1034 30 1 1.6371 -7.2093 -1.1977 31 1 1.5022 -7.2875 0.5754 32 1 -0.1088 -10.3920 -0.5765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = 52.096007 kcal Electronic energy + Delta-G solvation = -16411.363354 eV Core-core repulsion = 13602.172283 eV Total energy + Delta-G solvation = -2809.191071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97431 -38.75843 -36.37910 -34.06717 -33.06546 -30.33435 -29.76664 -28.55667 -27.36017 -24.72170 -23.95675 -21.28666 -20.15165 -19.00388 -18.36543 -16.50766 -15.73508 -15.58255 -15.33191 -15.08164 -14.61158 -14.47730 -13.81329 -13.54735 -13.16845 -12.75027 -12.51559 -12.20929 -12.18233 -11.85542 -11.50111 -10.88667 -10.81106 -10.54817 -10.25905 -9.98146 -9.58811 -9.39562 -8.87460 -8.52471 -7.69506 -7.39609 -6.15335 -4.15960 2.20659 2.63594 3.16688 3.27136 3.30873 3.36570 3.43810 3.67790 4.07058 4.42019 5.07814 5.15120 5.23677 5.44813 5.48160 5.70240 5.74677 5.77365 5.88257 6.05418 6.18623 6.44270 6.92722 6.96368 7.05225 7.14492 7.64166 7.72973 7.79173 7.88916 8.16100 8.28122 8.88383 8.94914 9.49762 10.96887 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.005115 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.580071 B = 5472.981803 C = 6136.572578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.614 5.614 3 C 0.108 3.892 4 C 0.350 3.650 5 C -0.319 4.319 6 C 0.344 3.656 7 N -0.666 5.666 8 C 0.520 3.480 9 O -0.505 6.505 10 C 0.012 3.988 11 C -0.513 4.513 12 H 0.077 0.923 13 C 0.057 3.943 14 N -0.900 5.900 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.271 1.271 19 N -0.503 5.503 20 H 0.433 0.567 21 N -0.357 5.357 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.171 0.829 29 H 0.408 0.592 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 14.124 1.180 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.338 5.338 3 C -0.036 4.036 4 C 0.093 3.907 5 C -0.353 4.353 6 C 0.122 3.878 7 N -0.314 5.314 8 C 0.310 3.690 9 O -0.376 6.376 10 C -0.028 4.028 11 C -0.551 4.551 12 H 0.096 0.904 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.196 1.196 19 N -0.219 5.219 20 H 0.276 0.724 21 N -0.192 5.192 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.189 0.811 29 H 0.243 0.757 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.920 15.063 1.245 16.232 hybrid contribution -0.578 -1.316 -0.133 1.444 sum 5.342 13.746 1.112 14.790 Atomic orbital electron populations 1.21527 0.78164 1.01744 1.01858 1.45364 1.04406 1.01047 1.83001 1.21487 0.97024 0.84464 1.00580 1.18992 0.89986 0.86834 0.94854 1.21181 1.01017 0.88367 1.24752 1.18293 0.87639 0.84272 0.97585 1.43797 1.11800 1.02055 1.73783 1.22392 0.80052 0.93483 0.73038 1.90491 1.37544 1.63333 1.46253 1.19286 1.00695 0.82804 0.99987 1.21122 0.90958 0.92610 1.50405 0.90442 1.24997 0.98289 0.96201 0.94964 1.69949 1.33294 1.00111 1.50520 0.86384 0.84483 0.77642 0.78348 1.20523 1.21223 1.19555 1.45859 1.06419 1.03472 1.66171 0.72382 1.77279 1.12734 0.91497 1.37664 0.92747 0.91067 0.92613 0.94138 0.92088 0.91392 0.81140 0.75689 0.92839 0.92825 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.29 10.09 59.85 0.60 1.90 16 2 N -0.61 -8.67 3.42 -189.29 -0.65 -9.32 16 3 C 0.11 1.18 10.59 59.85 0.63 1.81 16 4 C 0.35 6.02 7.59 -154.63 -1.17 4.84 16 5 C -0.32 -6.02 8.95 -39.60 -0.35 -6.38 16 6 C 0.34 5.95 8.10 -152.69 -1.24 4.72 16 7 N -0.67 -11.19 5.42 -11.35 -0.06 -11.25 16 8 C 0.52 11.16 7.79 -10.99 -0.09 11.07 16 9 O -0.51 -12.28 12.59 5.55 0.07 -12.21 16 10 C 0.01 0.28 5.46 -29.04 -0.16 0.12 16 11 C -0.51 -14.14 8.92 -34.44 -0.31 -14.45 16 12 H 0.08 2.22 6.75 -52.48 -0.35 1.87 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 N -0.50 -7.48 7.39 31.24 0.23 -7.24 16 20 H 0.43 4.75 8.96 -182.63 -1.64 3.11 16 21 N -0.36 -5.96 12.02 31.37 0.38 -5.59 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 27 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 28 H 0.17 3.54 5.67 -52.48 -0.30 3.24 16 29 H 0.41 5.28 8.82 -40.82 -0.36 4.92 16 30 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -32.83 280.50 -7.37 -40.20 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.11 Total: 4.34 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.18 Total: 5.10 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.64 Total: -58.05 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.83 -7.37 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.299 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds