Wall clock time and date at job start Sun Mar 29 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00161 * 2 1 4 4 C 1.39963 * 120.00185 * 180.02562 * 2 1 3 5 5 C 1.40287 * 125.85508 * 5.00102 * 4 2 1 6 6 C 1.36041 * 107.81187 * 180.02562 * 5 4 2 7 7 N 1.39455 * 126.20276 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00047 * 0.02562 * 7 6 5 9 9 O 1.21292 * 119.99984 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99757 * 179.97438 * 8 7 6 11 11 C 1.50702 * 109.47168 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99606 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00627 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99499 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47449 * 89.99396 * 15 13 11 17 17 H 1.48500 * 109.47346 * 209.99892 * 15 13 11 18 18 H 1.48506 * 109.46837 * 329.99731 * 15 13 11 19 19 N 1.35831 * 107.59594 * 0.26165 * 6 5 4 20 20 H 0.96996 * 126.02937 * 179.70572 * 19 6 5 21 21 N 1.31225 * 125.86111 * 185.03826 * 4 2 1 22 22 H 1.08996 * 109.46825 * 239.99512 * 1 2 3 23 23 H 1.08997 * 109.46868 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47031 * 119.99959 * 1 2 3 25 25 H 1.08998 * 109.47467 * 270.00269 * 3 2 1 26 26 H 1.09001 * 109.47032 * 30.00251 * 3 2 1 27 27 H 1.09000 * 109.47197 * 150.00331 * 3 2 1 28 28 H 1.08004 * 126.09487 * 0.02562 * 5 4 2 29 29 H 0.97004 * 119.99588 * 179.72659 * 7 6 5 30 30 H 1.08996 * 109.47390 * 299.99902 * 10 8 7 31 31 H 1.09004 * 109.47662 * 59.99777 * 10 8 7 32 32 H 0.97002 * 119.99797 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1649 -1.2121 -0.0005 5 6 1.5949 -2.4900 -0.1002 6 6 2.6051 -3.4004 -0.0633 7 7 2.4680 -4.7864 -0.1343 8 6 1.2436 -5.3373 -0.2518 9 8 0.2609 -4.6276 -0.2954 10 6 1.0955 -6.8349 -0.3291 11 6 -0.3637 -7.1896 -0.4552 12 1 -1.1094 -6.4086 -0.4768 13 6 -0.7471 -8.5111 -0.5419 14 7 0.1608 -9.4622 -0.5151 15 14 -2.5558 -8.9507 -0.6990 16 1 -2.9289 -9.0064 -2.1353 17 1 -2.7997 -10.2748 -0.0725 18 1 -3.3769 -7.9202 -0.0139 19 7 3.7711 -2.7149 0.0616 20 1 4.6581 -3.1034 0.1176 21 7 3.4667 -1.3481 0.0928 22 1 -0.3633 -0.5139 0.8899 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 2.3792 1.5834 -1.0276 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 0.5416 -2.7117 -0.1902 29 1 3.2542 -5.3537 -0.1034 30 1 1.6371 -7.2093 -1.1977 31 1 1.5022 -7.2875 0.5754 32 1 -0.1088 -10.3920 -0.5765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:04 Heat of formation + Delta-G solvation = 29.627198 kcal Electronic energy + Delta-G solvation = -16412.337675 eV Core-core repulsion = 13602.172283 eV Total energy + Delta-G solvation = -2810.165391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.34397 -40.38771 -37.50243 -35.60031 -35.13001 -31.63838 -31.47373 -29.95265 -28.52029 -25.92825 -25.75649 -22.86708 -21.50645 -20.44718 -19.72798 -18.50435 -17.33086 -16.94952 -16.69010 -16.60122 -16.05612 -15.96609 -15.11429 -14.87867 -14.79624 -14.27797 -14.13397 -13.40288 -13.34988 -13.09247 -12.82526 -12.72103 -12.62059 -12.07374 -12.05965 -11.54885 -11.42986 -10.84841 -10.63553 -10.61423 -9.12835 -8.53044 -8.25392 -6.32207 0.77310 1.32187 1.43664 1.44558 1.56896 1.78717 1.97524 2.14060 2.43582 2.87865 3.11524 3.86986 4.14152 4.28771 4.54068 4.58670 4.69373 4.72191 4.84229 4.96695 4.97592 4.98429 5.10736 5.22494 5.55627 5.73159 5.84646 6.04632 6.41881 6.51978 6.62820 6.80408 6.99125 7.22598 7.38504 8.86498 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040536 B = 0.005115 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.580071 B = 5472.981803 C = 6136.572578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.618 5.618 3 C 0.105 3.895 4 C 0.343 3.657 5 C -0.345 4.345 6 C 0.340 3.660 7 N -0.644 5.644 8 C 0.527 3.473 9 O -0.538 6.538 10 C 0.016 3.984 11 C -0.537 4.537 12 H 0.059 0.941 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.273 1.273 19 N -0.483 5.483 20 H 0.451 0.549 21 N -0.361 5.361 22 H 0.044 0.956 23 H 0.109 0.891 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.428 0.572 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.137 15.030 1.255 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.342 5.342 3 C -0.037 4.037 4 C 0.085 3.915 5 C -0.379 4.379 6 C 0.117 3.883 7 N -0.294 5.294 8 C 0.317 3.683 9 O -0.412 6.412 10 C -0.023 4.023 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.198 1.198 19 N -0.200 5.200 20 H 0.298 0.702 21 N -0.197 5.197 22 H 0.063 0.937 23 H 0.127 0.873 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.267 0.733 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.396 15.984 1.324 17.267 hybrid contribution -0.656 -1.532 -0.151 1.674 sum 5.740 14.452 1.173 15.594 Atomic orbital electron populations 1.21653 0.77135 1.03907 1.00817 1.45760 1.05292 1.01025 1.82124 1.21669 0.97000 0.83685 1.01391 1.19207 0.90077 0.87523 0.94672 1.21110 1.00487 0.89976 1.26375 1.18147 0.88397 0.83916 0.97818 1.43226 1.11196 1.02418 1.72512 1.21840 0.80922 0.92550 0.73029 1.90499 1.39077 1.63688 1.47893 1.19104 0.98805 0.84534 0.99882 1.21350 0.92616 0.92603 1.50993 0.92273 1.25714 1.02244 0.96050 0.94507 1.70011 1.34913 1.00454 1.50870 0.85482 0.79739 0.77508 0.78552 1.19812 1.20121 1.19809 1.45794 1.06598 1.02771 1.64887 0.70180 1.77252 1.12489 0.92029 1.37940 0.93691 0.87256 0.93838 0.93414 0.88969 0.92225 0.83482 0.73290 0.92799 0.92790 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 10.09 127.77 1.29 3.71 16 2 N -0.62 -16.64 3.42 -752.80 -2.57 -19.21 16 3 C 0.10 2.05 10.59 127.77 1.35 3.40 16 4 C 0.34 11.52 7.59 133.36 1.01 12.54 16 5 C -0.35 -13.09 8.95 22.26 0.20 -12.90 16 6 C 0.34 11.51 8.10 131.13 1.06 12.57 16 7 N -0.64 -21.14 5.42 -308.22 -1.67 -22.81 16 8 C 0.53 22.75 7.79 87.66 0.68 23.44 16 9 O -0.54 -26.80 12.59 -3.07 -0.04 -26.84 16 10 C 0.02 0.78 5.46 29.10 0.16 0.94 16 11 C -0.54 -30.03 8.92 25.60 0.23 -29.80 16 12 H 0.06 3.47 6.75 -2.91 -0.02 3.45 16 13 C 0.01 0.77 5.46 84.65 0.46 1.23 16 14 N -0.92 -51.82 13.29 21.45 0.28 -51.53 16 15 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 N -0.48 -13.52 7.39 -55.09 -0.41 -13.93 16 20 H 0.45 8.83 8.96 -213.35 -1.91 6.92 16 21 N -0.36 -11.55 12.02 -54.65 -0.66 -12.21 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.11 1.57 7.79 -2.39 -0.02 1.55 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.22 7.92 -2.39 -0.02 1.20 16 27 H 0.06 1.27 7.63 -2.39 -0.02 1.25 16 28 H 0.15 6.34 5.67 -2.91 -0.02 6.32 16 29 H 0.43 10.40 8.82 -92.71 -0.82 9.58 16 30 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -70.09 280.50 1.84 -68.25 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -1.57 Total: 17.33 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.45 Total: 15.13 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.02 Total: -119.69 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.04 Total: -26.84 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.09 1.84 -68.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.876 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds