Wall clock time and date at job start Sun Mar 29 2020 22:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48505 * 109.47300 * 270.00017 * 3 2 1 5 5 H 1.48505 * 109.47387 * 29.99892 * 3 2 1 6 6 H 1.48504 * 109.47106 * 149.99937 * 3 2 1 7 7 C 1.38805 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99731 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00053 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99986 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47491 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47467 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47201 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00046 * 179.97438 * 13 12 11 15 15 O 1.21616 * 119.99956 * 0.02562 * 14 13 12 16 16 C 1.47100 * 120.00082 * 180.02562 * 14 13 12 17 17 C 1.32610 * 124.62105 * 180.02562 * 16 14 13 18 18 C 1.51119 * 110.75876 * 179.73707 * 17 16 14 19 19 C 1.54581 * 104.83726 * 16.84375 * 18 17 16 20 20 C 1.51116 * 124.61935 * 0.16857 * 16 14 13 21 21 H 0.97005 * 120.00173 * 359.97438 * 1 2 3 22 22 H 0.96992 * 120.00390 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47231 * 60.00239 * 10 9 7 24 24 H 1.09007 * 109.47284 * 299.99891 * 10 9 7 25 25 H 1.09001 * 109.46811 * 59.99831 * 11 10 9 26 26 H 1.08998 * 109.46795 * 300.00414 * 11 10 9 27 27 H 1.09001 * 109.47175 * 60.00137 * 12 11 10 28 28 H 1.09000 * 109.47128 * 300.00420 * 12 11 10 29 29 H 0.96998 * 120.00201 * 0.02562 * 13 12 11 30 30 H 1.08002 * 124.62322 * 0.02562 * 17 16 14 31 31 H 1.09003 * 110.36233 * 135.68401 * 18 17 16 32 32 H 1.08999 * 110.36538 * 258.00007 * 18 17 16 33 33 H 1.09003 * 110.98246 * 93.07271 * 19 18 17 34 34 H 1.08999 * 110.97876 * 216.86735 * 19 18 17 35 35 H 1.08999 * 110.50363 * 44.70466 * 20 16 14 36 36 H 1.08999 * 110.26216 * 282.46911 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6164 -2.1912 0.0000 12 6 6.3815 -3.5161 0.0007 13 7 7.8218 -3.2484 0.0000 14 6 8.6976 -4.2728 0.0010 15 8 8.2923 -5.4194 0.0019 16 6 10.1439 -4.0039 0.0009 17 6 11.0840 -4.9392 0.0013 18 6 12.4603 -4.3151 -0.0054 19 6 12.2316 -2.8475 0.4230 20 6 10.7607 -2.6244 0.0035 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3620 -0.0004 23 1 3.8486 -3.0425 -0.8898 24 1 3.8493 -3.0421 0.8903 25 1 5.8797 -1.6196 0.8900 26 1 5.8797 -1.6195 -0.8899 27 1 6.1183 -4.0881 -0.8891 28 1 6.1180 -4.0873 0.8908 29 1 8.1451 -2.3339 -0.0003 30 1 10.8923 -6.0020 0.0013 31 1 13.1100 -4.8218 0.7083 32 1 12.8903 -4.3555 -1.0061 33 1 12.3521 -2.7321 1.5002 34 1 12.8979 -2.1750 -0.1171 35 1 10.2544 -1.9812 0.7233 36 1 10.7128 -2.1876 -0.9940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156523565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:13 Heat of formation + Delta-G solvation = -46.382705 kcal Electronic energy + Delta-G solvation = -16027.615687 eV Core-core repulsion = 13317.694603 eV Total energy + Delta-G solvation = -2709.921085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04159 -38.75509 -37.61336 -36.00316 -33.90998 -31.95687 -30.24807 -29.26179 -27.03555 -24.34719 -22.88012 -22.73467 -21.55518 -20.02174 -19.38638 -18.10736 -17.21732 -16.92405 -16.55881 -16.30271 -15.80646 -15.46744 -15.19126 -14.82014 -13.96763 -13.80904 -13.80518 -13.57520 -12.99328 -12.88728 -12.59799 -12.57377 -12.49771 -12.13030 -12.04346 -12.02474 -11.98766 -11.81435 -11.04916 -10.99069 -10.24859 -9.82771 -9.33396 -8.04176 -5.39573 0.36402 1.38079 1.43591 1.50966 2.16340 2.24090 2.48662 3.26904 3.51273 3.54681 3.65075 4.04509 4.06718 4.20685 4.22655 4.26043 4.32463 4.67087 4.68078 4.77956 4.83308 4.86508 4.92103 4.98736 5.18992 5.21691 5.25923 5.33089 5.37555 5.42631 5.54312 5.73371 6.19357 6.51955 7.06022 7.17348 7.80198 8.01581 9.17395 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046041 B = 0.003676 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.002363 B = 7614.652439 C = 8174.694523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.556 3.444 15 O -0.594 6.594 16 C -0.215 4.215 17 C -0.072 4.072 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.090 4.090 21 H 0.259 0.741 22 H 0.369 0.631 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.416 0.584 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.297 -3.259 0.089 30.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.027 3.973 11 C -0.160 4.160 12 C 0.005 3.995 13 N -0.362 5.362 14 C 0.346 3.654 15 O -0.477 6.477 16 C -0.218 4.218 17 C -0.091 4.091 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.127 4.127 21 H 0.068 0.932 22 H 0.203 0.797 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.253 0.747 30 H 0.144 0.856 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.787 -4.141 0.093 30.074 hybrid contribution -0.530 0.958 -0.018 1.095 sum 29.257 -3.183 0.076 29.430 Atomic orbital electron populations 1.69908 1.07374 1.26933 1.59366 1.25641 0.96256 1.01779 1.02211 0.85287 0.78730 0.78727 0.78283 1.20130 1.22205 1.16992 1.19048 0.82832 0.93558 1.41997 0.92956 1.42643 1.02475 1.04190 1.91127 1.20653 0.90551 0.87591 0.98482 1.21757 0.93403 0.96787 1.04008 1.21122 0.79229 0.97197 1.01983 1.45806 1.06131 1.10022 1.74206 1.18571 0.87259 0.84294 0.75294 1.90769 1.81067 1.23115 1.52718 1.21913 0.90777 0.99437 1.09674 1.24363 0.95767 0.99126 0.89881 1.21559 0.93155 0.95728 1.03632 1.22463 0.95053 0.95955 1.02209 1.21310 0.96156 0.92174 1.03028 0.93207 0.79720 0.95657 0.95770 0.89935 0.89795 0.92022 0.92066 0.74717 0.85597 0.88832 0.88217 0.90455 0.88631 0.90034 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.93 13.97 21.65 0.30 -63.63 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 44.80 27.73 68.60 1.90 46.70 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.25 -10.02 6.52 99.48 0.65 -9.38 16 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 9 N -0.76 -35.40 5.41 -343.45 -1.86 -37.25 16 10 C 0.15 5.78 6.26 86.38 0.54 6.32 16 11 C -0.12 -3.21 5.44 30.59 0.17 -3.04 16 12 C 0.13 3.33 5.67 86.38 0.49 3.82 16 13 N -0.71 -15.55 5.55 -466.72 -2.59 -18.14 16 14 C 0.56 14.43 7.79 86.57 0.67 15.10 16 15 O -0.59 -20.77 16.77 -4.08 -0.07 -20.84 16 16 C -0.22 -3.99 6.10 -18.56 -0.11 -4.10 16 17 C -0.07 -1.17 10.43 24.66 0.26 -0.91 16 18 C -0.10 -0.93 6.80 30.52 0.21 -0.72 16 19 C -0.12 -0.93 7.16 31.67 0.23 -0.70 16 20 C -0.09 -1.00 6.01 30.52 0.18 -0.82 16 21 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 22 H 0.37 15.87 5.53 -92.71 -0.51 15.36 16 23 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.42 6.48 7.49 -92.71 -0.69 5.79 16 30 H 0.13 2.28 8.03 -2.91 -0.02 2.26 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.79 7.85 -2.39 -0.02 0.77 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.87 302.64 1.48 -74.39 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.19 Total: 20.68 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.98 Total: -1.91 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.14 Total: -119.02 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Total: -75.87 1.48 -74.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156523565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.010 kcal (2) G-P(sol) polarization free energy of solvation -75.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds