Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38025 * 119.55175 * 2 1 4 4 C 1.38861 * 119.34460 * 179.77561 * 3 2 1 5 5 C 1.38479 * 118.48715 * 0.49178 * 4 3 2 6 6 F 1.35095 * 120.47574 * 179.72917 * 5 4 3 7 7 C 1.39301 * 119.05677 * 359.75757 * 5 4 3 8 8 N 1.39148 * 119.72040 * 180.02562 * 7 5 4 9 9 C 1.46503 * 120.00437 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47424 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47283 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46998 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00441 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00279 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99818 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46791 * 60.00246 * 16 14 12 18 18 H 1.48503 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46957 * 299.99995 * 16 14 12 20 20 N 1.31982 * 119.54917 * 180.27744 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72142 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.71740 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72370 * 1 2 3 24 24 H 1.08003 * 120.32712 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.75630 * 180.24392 * 4 3 2 26 26 H 0.97002 * 120.00090 * 359.97372 * 8 7 5 27 27 H 1.09003 * 109.47239 * 300.00123 * 9 8 7 28 28 H 1.09006 * 109.46521 * 59.99938 * 9 8 7 29 29 H 1.09003 * 109.46860 * 300.00168 * 10 9 8 30 30 H 1.08998 * 109.47176 * 59.99761 * 10 9 8 31 31 H 1.09003 * 109.46995 * 299.99700 * 11 10 9 32 32 H 1.08998 * 109.47524 * 59.99589 * 11 10 9 33 33 H 0.96998 * 120.00468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2007 0.0000 4 6 3.5764 1.1957 0.0047 5 6 4.2325 -0.0238 -0.0011 6 9 5.5825 -0.0755 -0.0023 7 6 3.4807 -1.1965 -0.0063 8 7 4.1258 -2.4294 -0.0117 9 6 3.3413 -3.6667 -0.0167 10 6 4.2863 -4.8699 -0.0214 11 6 3.4670 -6.1619 -0.0272 12 6 4.3979 -7.3470 -0.0325 13 1 5.4669 -7.1940 -0.0321 14 6 3.8847 -8.6268 -0.0377 15 7 2.5828 -8.8132 -0.0386 16 14 5.0386 -10.0958 -0.0449 17 1 5.8957 -10.0579 1.1672 18 1 4.2433 -11.3499 -0.0504 19 1 5.8940 -10.0473 -1.2579 20 7 2.1580 -1.1481 -0.0056 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8925 -0.5094 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6458 2.1349 0.0004 25 1 4.1320 2.1218 0.0088 26 1 5.0950 -2.4698 -0.0122 27 1 2.7130 -3.7021 0.8734 28 1 2.7125 -3.6945 -0.9067 29 1 4.9149 -4.8346 -0.9112 30 1 4.9148 -4.8417 0.8687 31 1 2.8381 -6.1974 0.8624 32 1 2.8388 -6.1899 -0.9175 33 1 2.2218 -9.7135 -0.0426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = -28.824154 kcal Electronic energy + Delta-G solvation = -15940.392826 eV Core-core repulsion = 13107.772832 eV Total energy + Delta-G solvation = -2832.619994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.80848 -40.13963 -36.42800 -33.77684 -32.56560 -31.98084 -30.32447 -27.48338 -26.07128 -23.63684 -22.31616 -22.03463 -20.29356 -17.69013 -17.23487 -16.82931 -16.25544 -15.89853 -14.71382 -14.70992 -14.51577 -14.16479 -14.09368 -13.83959 -12.92227 -12.71418 -12.53300 -12.27090 -12.10176 -11.76411 -11.72344 -10.91058 -10.70341 -10.59304 -10.26762 -9.77033 -9.61612 -9.40921 -9.38372 -9.12684 -8.36191 -7.53841 -6.01132 -4.04055 1.03034 1.30344 3.25961 3.32994 3.37390 3.40042 3.69872 4.18832 4.32491 4.45725 4.60285 4.91214 5.17260 5.34615 5.42168 5.51902 5.57216 5.70896 5.81873 5.82021 5.95016 6.03122 6.19954 6.43727 6.63180 6.74829 6.97900 7.26635 7.44937 7.64002 7.77063 7.97673 8.20927 8.39297 9.02245 9.60007 11.10144 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004249 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.775271 B = 6588.723880 C = 7273.447550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.171 3.829 3 C -0.223 4.223 4 C -0.062 4.062 5 C -0.041 4.041 6 F -0.139 7.139 7 C 0.396 3.604 8 N -0.713 5.713 9 C 0.130 3.870 10 C -0.123 4.123 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.518 5.518 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.410 0.590 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 20.259 0.099 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.246 4.246 4 C -0.088 4.088 5 C -0.068 4.068 6 F -0.118 7.118 7 C 0.156 3.844 8 N -0.343 5.343 9 C 0.007 3.993 10 C -0.161 4.161 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 N -0.237 5.237 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.154 0.846 25 H 0.159 0.841 26 H 0.246 0.754 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.981 19.119 0.092 19.222 hybrid contribution 1.757 -0.108 0.012 1.760 sum -0.224 19.011 0.103 19.013 Atomic orbital electron populations 1.20732 0.88533 1.03601 1.03275 1.21046 0.96815 0.87353 0.91532 1.21452 0.93348 0.99207 1.10583 1.21309 0.95026 0.96380 0.96118 1.17973 0.77622 0.94177 1.17032 1.91444 1.28288 1.97103 1.95011 1.18490 0.88649 0.85722 0.91513 1.44991 1.08953 1.02522 1.77865 1.21601 0.94422 0.81461 1.01813 1.21911 0.98416 0.94945 1.00861 1.19005 0.95083 0.89449 0.97614 1.21179 0.92997 0.90966 1.51009 0.92725 1.25019 0.95044 0.99066 0.95244 1.69950 1.10989 1.21849 1.50546 0.86643 0.80775 0.81879 0.78614 1.20238 1.21246 1.20243 1.67199 1.06000 1.29671 1.20872 0.90172 0.90586 0.90166 0.84581 0.84107 0.75385 0.91884 0.91881 0.92805 0.92800 0.96269 0.96270 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.01 0.37 -0.57 16 2 C 0.17 2.10 6.78 -82.60 -0.56 1.55 16 3 C -0.22 -2.30 9.73 -39.43 -0.38 -2.68 16 4 C -0.06 -0.69 10.15 -39.26 -0.40 -1.09 16 5 C -0.04 -0.57 7.35 -39.10 -0.29 -0.86 16 6 F -0.14 -1.94 16.65 2.25 0.04 -1.90 16 7 C 0.40 6.19 7.49 -154.85 -1.16 5.03 16 8 N -0.71 -11.43 5.71 -60.34 -0.34 -11.77 16 9 C 0.13 2.35 5.70 -4.04 -0.02 2.33 16 10 C -0.12 -2.51 5.27 -26.74 -0.14 -2.65 16 11 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 N -0.52 -8.07 9.48 -8.59 -0.08 -8.15 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 25 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.41 6.00 7.94 -40.82 -0.32 5.68 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -31.08 291.46 -7.93 -39.01 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.51 Total: -0.08 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -3.14 Total: -11.98 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.31 Total: -46.11 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.08 -7.93 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.187 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds