Wall clock time and date at job start Sun Mar 29 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38025 * 119.55175 * 2 1 4 4 C 1.38861 * 119.34460 * 179.77561 * 3 2 1 5 5 C 1.38479 * 118.48715 * 0.49178 * 4 3 2 6 6 F 1.35095 * 120.47574 * 179.72917 * 5 4 3 7 7 C 1.39301 * 119.05677 * 359.75757 * 5 4 3 8 8 N 1.39148 * 119.72040 * 180.02562 * 7 5 4 9 9 C 1.46503 * 120.00437 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47424 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47283 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46998 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00441 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00279 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99818 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46791 * 60.00246 * 16 14 12 18 18 H 1.48503 * 109.46890 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46957 * 299.99995 * 16 14 12 20 20 N 1.31982 * 119.54917 * 180.27744 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72142 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.71740 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72370 * 1 2 3 24 24 H 1.08003 * 120.32712 * 0.02562 * 3 2 1 25 25 H 1.08000 * 120.75630 * 180.24392 * 4 3 2 26 26 H 0.97002 * 120.00090 * 359.97372 * 8 7 5 27 27 H 1.09003 * 109.47239 * 300.00123 * 9 8 7 28 28 H 1.09006 * 109.46521 * 59.99938 * 9 8 7 29 29 H 1.09003 * 109.46860 * 300.00168 * 10 9 8 30 30 H 1.08998 * 109.47176 * 59.99761 * 10 9 8 31 31 H 1.09003 * 109.46995 * 299.99700 * 11 10 9 32 32 H 1.08998 * 109.47524 * 59.99589 * 11 10 9 33 33 H 0.96998 * 120.00468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2007 0.0000 4 6 3.5764 1.1957 0.0047 5 6 4.2325 -0.0238 -0.0011 6 9 5.5825 -0.0755 -0.0023 7 6 3.4807 -1.1965 -0.0063 8 7 4.1258 -2.4294 -0.0117 9 6 3.3413 -3.6667 -0.0167 10 6 4.2863 -4.8699 -0.0214 11 6 3.4670 -6.1619 -0.0272 12 6 4.3979 -7.3470 -0.0325 13 1 5.4669 -7.1940 -0.0321 14 6 3.8847 -8.6268 -0.0377 15 7 2.5828 -8.8132 -0.0386 16 14 5.0386 -10.0958 -0.0449 17 1 5.8957 -10.0579 1.1672 18 1 4.2433 -11.3499 -0.0504 19 1 5.8940 -10.0473 -1.2579 20 7 2.1580 -1.1481 -0.0056 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3634 0.8925 -0.5094 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6458 2.1349 0.0004 25 1 4.1320 2.1218 0.0088 26 1 5.0950 -2.4698 -0.0122 27 1 2.7130 -3.7021 0.8734 28 1 2.7125 -3.6945 -0.9067 29 1 4.9149 -4.8346 -0.9112 30 1 4.9148 -4.8417 0.8687 31 1 2.8381 -6.1974 0.8624 32 1 2.8388 -6.1899 -0.9175 33 1 2.2218 -9.7135 -0.0426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:27 Heat of formation + Delta-G solvation = -47.464556 kcal Electronic energy + Delta-G solvation = -15941.201135 eV Core-core repulsion = 13107.772832 eV Total energy + Delta-G solvation = -2833.428302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.84089 -41.14215 -37.77806 -35.61217 -33.74234 -33.40455 -31.66792 -28.86734 -27.44188 -25.19060 -23.38880 -23.35636 -21.99196 -18.80479 -18.55630 -18.10186 -17.89743 -16.98958 -16.51762 -16.21684 -15.79309 -15.32898 -15.10844 -14.76545 -14.27871 -14.01713 -13.96327 -13.68127 -13.26119 -13.12898 -12.86604 -12.72373 -12.57058 -12.38449 -11.79766 -11.52344 -11.23166 -11.15573 -10.56390 -10.50884 -10.48424 -8.64980 -8.21001 -6.32721 0.07054 0.35273 1.40109 1.43290 1.51237 2.10501 2.41199 2.72041 3.12292 3.17329 3.37954 3.78481 4.02751 4.16337 4.20209 4.32391 4.53549 4.61569 4.81809 4.85397 4.93641 4.94301 5.02849 5.11213 5.12709 5.25116 5.46893 5.62451 5.67857 5.81421 6.04869 6.22090 6.32953 6.83317 7.16433 7.36613 8.90868 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.004249 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.775271 B = 6588.723880 C = 7273.447550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.152 3.848 3 C -0.203 4.203 4 C -0.056 4.056 5 C -0.056 4.056 6 F -0.144 7.144 7 C 0.369 3.631 8 N -0.720 5.720 9 C 0.152 3.848 10 C -0.106 4.106 11 C 0.029 3.971 12 C -0.546 4.546 13 H 0.062 0.938 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 N -0.553 5.553 21 H 0.090 0.910 22 H 0.108 0.892 23 H 0.064 0.936 24 H 0.179 0.821 25 H 0.176 0.824 26 H 0.414 0.586 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.060 0.940 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 22.158 0.113 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.014 3.986 3 C -0.225 4.225 4 C -0.082 4.082 5 C -0.083 4.083 6 F -0.123 7.123 7 C 0.131 3.869 8 N -0.353 5.353 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.009 4.009 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.192 1.192 20 N -0.272 5.272 21 H 0.108 0.892 22 H 0.127 0.873 23 H 0.083 0.917 24 H 0.196 0.804 25 H 0.193 0.807 26 H 0.251 0.749 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.392 21.065 0.106 21.111 hybrid contribution 1.469 -0.551 0.009 1.569 sum 0.076 20.514 0.115 20.515 Atomic orbital electron populations 1.20838 0.86451 1.04471 1.04136 1.21722 0.98363 0.87335 0.91167 1.21932 0.93188 1.00035 1.07352 1.21772 0.95597 0.96492 0.94314 1.18178 0.77524 0.94637 1.17924 1.91428 1.28561 1.97163 1.95162 1.18679 0.89176 0.85864 0.93193 1.44697 1.08896 1.02124 1.79557 1.21082 0.93615 0.81938 1.00531 1.21622 0.97994 0.93313 1.01440 1.18891 0.94883 0.91939 0.95202 1.21639 0.93714 0.92096 1.50969 0.91990 1.25993 0.96748 1.02441 0.94602 1.70091 1.13054 1.22716 1.51390 0.85478 0.78552 0.77682 0.79193 1.19144 1.20779 1.19159 1.67184 1.06330 1.31928 1.21782 0.89176 0.87318 0.91721 0.80369 0.80694 0.74875 0.93224 0.93226 0.92124 0.92112 0.98718 0.98722 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.17 71.24 0.72 -0.89 16 2 C 0.15 3.47 6.78 42.49 0.29 3.76 16 3 C -0.20 -3.44 9.73 22.37 0.22 -3.22 16 4 C -0.06 -1.06 10.15 22.48 0.23 -0.83 16 5 C -0.06 -1.48 7.35 22.58 0.17 -1.32 16 6 F -0.14 -3.88 16.65 44.97 0.75 -3.14 16 7 C 0.37 11.57 7.49 133.06 1.00 12.56 16 8 N -0.72 -23.63 5.71 -344.82 -1.97 -25.60 16 9 C 0.15 5.75 5.70 86.38 0.49 6.24 16 10 C -0.11 -4.42 5.27 30.59 0.16 -4.26 16 11 C 0.03 1.53 4.97 29.85 0.15 1.68 16 12 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.00 0.01 5.46 84.66 0.46 0.47 16 15 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 N -0.55 -17.23 9.48 -181.10 -1.72 -18.95 16 21 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 25 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 26 H 0.41 12.35 7.94 -92.71 -0.74 11.61 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -68.73 291.46 3.86 -64.87 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.37 Total: 10.36 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 4.12 Total: -17.01 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -3.40 Total: -101.64 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.14 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.73 3.86 -64.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.403 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds