Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37100 * 119.99970 * 2 1 4 4 H 1.08001 * 119.99776 * 203.33442 * 3 2 1 5 5 C 1.38950 * 120.00102 * 23.33194 * 3 2 1 6 6 N 1.31408 * 119.99976 * 11.44571 * 5 3 2 7 7 Si 1.86799 * 119.99899 * 191.44056 * 5 3 2 8 8 H 1.48504 * 109.46901 * 84.94797 * 7 5 3 9 9 H 1.48500 * 109.46941 * 204.94142 * 7 5 3 10 10 H 1.48498 * 109.47495 * 324.94779 * 7 5 3 11 11 C 1.34780 * 120.00201 * 180.02562 * 2 1 3 12 12 O 1.21289 * 119.99969 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99522 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.47570 * 39.99913 * 13 11 2 15 15 N 1.46906 * 109.47223 * 160.00323 * 13 11 2 16 16 C 1.53000 * 109.47297 * 280.00078 * 13 11 2 17 17 C 1.50702 * 109.47377 * 175.00295 * 16 13 11 18 18 C 1.34672 * 126.58956 * 84.97635 * 17 16 13 19 19 N 1.34132 * 108.01828 * 180.02562 * 18 17 16 20 20 C 1.30501 * 109.25242 * 359.97438 * 19 18 17 21 21 N 1.35038 * 108.70717 * 359.97438 * 20 19 18 22 22 H 0.96996 * 126.40374 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47084 * 271.25030 * 1 2 3 24 24 H 1.09004 * 109.47078 * 31.24508 * 1 2 3 25 25 H 1.08999 * 109.47174 * 151.24520 * 1 2 3 26 26 H 0.96999 * 120.00134 * 179.97438 * 6 5 3 27 27 H 1.00898 * 110.99900 * 296.04683 * 15 13 11 28 28 H 1.00902 * 110.99566 * 59.99731 * 15 13 11 29 29 H 1.09006 * 109.47095 * 54.99984 * 16 13 11 30 30 H 1.09007 * 109.47342 * 295.00674 * 16 13 11 31 31 H 1.07994 * 125.99180 * 0.02562 * 18 17 16 32 32 H 1.08002 * 125.64497 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1642 1.2255 -0.3705 5 6 1.5410 2.3415 0.4766 6 7 0.4037 2.2620 1.1302 7 14 2.3382 4.0060 0.1883 8 1 1.9437 4.5189 -1.1483 9 1 1.8894 4.9579 1.2360 10 1 3.8153 3.8645 0.2479 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 1 0.5217 -2.3932 -0.6607 15 7 2.2675 -3.5470 -0.4747 16 6 0.9140 -2.7890 1.4202 17 6 0.0571 -4.0285 1.4005 18 6 0.4883 -5.3034 1.4514 19 7 -0.5853 -6.1064 1.4100 20 6 -1.6653 -5.3776 1.3360 21 7 -1.3091 -4.0750 1.3284 22 1 -1.9090 -3.3145 1.2795 23 1 -0.3633 0.0224 1.0274 24 1 -0.3633 0.8786 -0.5331 25 1 -0.3633 -0.9009 -0.4944 26 1 -0.0216 3.0677 1.4632 27 1 2.5408 -3.3937 -1.4338 28 1 3.0763 -3.6404 0.1213 29 1 0.3324 -1.9513 1.8053 30 1 1.7795 -2.9557 2.0616 31 1 1.5179 -5.6230 1.5145 32 1 -2.6765 -5.7539 1.2886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160585151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = 28.920747 kcal Electronic energy + Delta-G solvation = -17057.425976 eV Core-core repulsion = 14247.229951 eV Total energy + Delta-G solvation = -2810.196025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76413 -38.89396 -35.18338 -34.41043 -32.23968 -31.67777 -30.40287 -27.40551 -26.27998 -24.87662 -22.78494 -21.21039 -20.53164 -18.84249 -17.68349 -17.01942 -16.41183 -15.46332 -14.87750 -14.73187 -14.38182 -14.10107 -13.83126 -13.35055 -13.14317 -12.88428 -12.32872 -12.07334 -11.67218 -11.47073 -11.26793 -11.08363 -10.86803 -10.44822 -10.31747 -9.76813 -9.74987 -9.18561 -9.11464 -8.14751 -7.92383 -7.80608 -6.42499 -4.00038 2.30168 3.08793 3.18322 3.23058 3.33364 3.44202 3.76559 4.05280 4.73961 4.89843 4.94651 5.00476 5.24196 5.36289 5.55013 5.65744 5.81658 5.92015 5.97344 6.14547 6.25381 6.56805 6.70735 7.02863 7.05176 7.43934 7.46094 7.59299 7.83649 8.01657 8.30218 8.35868 9.06665 9.30074 9.83798 10.60673 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.042288 B = 0.006221 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.960709 B = 4499.991937 C = 4985.415323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.439 5.439 3 C -0.309 4.309 4 H 0.098 0.902 5 C 0.032 3.968 6 N -0.883 5.883 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.410 3.590 12 O -0.593 6.593 13 C 0.087 3.913 14 H 0.086 0.914 15 N -0.817 5.817 16 C -0.031 4.031 17 C 0.003 3.997 18 C -0.008 4.008 19 N -0.499 5.499 20 C 0.167 3.833 21 N -0.569 5.569 22 H 0.417 0.583 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.268 0.732 27 H 0.339 0.661 28 H 0.344 0.656 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.166 0.834 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 -7.322 -0.051 9.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.158 5.158 3 C -0.438 4.438 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.522 5.522 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.196 3.804 12 O -0.478 6.478 13 C -0.029 4.029 14 H 0.104 0.896 15 N -0.345 5.345 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.156 4.156 19 N -0.219 5.219 20 C -0.116 4.116 21 N -0.173 5.173 22 H 0.254 0.746 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.183 0.817 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.364 -8.559 0.205 10.667 hybrid contribution 0.413 3.035 -0.283 3.076 sum -5.951 -5.524 -0.078 8.120 Atomic orbital electron populations 1.21567 0.81431 0.98910 1.01458 1.43676 1.05394 1.05017 1.61678 1.19675 0.99971 0.84158 1.39948 0.88445 1.25350 0.96482 1.00173 0.95114 1.69963 1.17867 1.29594 1.34801 0.85923 0.79687 0.81021 0.77987 1.20258 1.20863 1.19375 1.21195 0.88704 0.85958 0.84500 1.90517 1.13935 1.87014 1.56356 1.21323 0.96403 0.88746 0.96418 0.89590 1.59249 1.23712 1.44009 1.07526 1.19955 0.98029 0.92725 0.96364 1.21124 0.82611 0.98132 1.09383 1.21943 0.97999 0.88294 1.07319 1.70239 0.97947 1.34227 1.19478 1.24787 0.99978 0.79565 1.07238 1.43284 1.07512 1.09615 1.56927 0.74578 0.92348 0.91205 0.95623 0.92148 0.84949 0.84241 0.90122 0.89307 0.81665 0.78195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 7.81 59.85 0.47 2.76 16 2 N -0.44 -10.71 3.02 -122.19 -0.37 -11.08 16 3 C -0.31 -8.38 9.27 -14.93 -0.14 -8.52 16 4 H 0.10 2.79 7.42 -52.49 -0.39 2.40 16 5 C 0.03 0.82 5.10 -17.47 -0.09 0.74 16 6 N -0.88 -22.60 10.67 55.50 0.59 -22.01 16 7 Si 0.93 20.27 29.57 -169.99 -5.03 15.24 16 8 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.41 9.41 6.87 -10.99 -0.08 9.34 16 12 O -0.59 -15.64 15.95 5.55 0.09 -15.55 16 13 C 0.09 1.53 2.40 -68.86 -0.17 1.36 16 14 H 0.09 1.46 6.30 -51.93 -0.33 1.14 16 15 N -0.82 -13.16 8.46 -5.65 -0.05 -13.21 16 16 C -0.03 -0.49 5.33 -27.88 -0.15 -0.64 16 17 C 0.00 0.04 6.29 -81.60 -0.51 -0.47 16 18 C -0.01 -0.13 11.51 -17.81 -0.20 -0.33 16 19 N -0.50 -7.73 11.25 -14.67 -0.17 -7.90 16 20 C 0.17 2.03 13.04 -90.38 -1.18 0.86 16 21 N -0.57 -6.81 6.15 -10.30 -0.06 -6.87 16 22 H 0.42 3.84 8.96 -40.82 -0.37 3.47 16 23 H 0.06 1.24 7.15 -51.93 -0.37 0.86 16 24 H 0.07 1.56 7.06 -51.93 -0.37 1.19 16 25 H 0.03 0.44 5.89 -51.93 -0.31 0.13 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.34 5.38 9.06 -39.29 -0.36 5.03 16 28 H 0.34 5.64 8.58 -39.29 -0.34 5.31 16 29 H 0.08 1.31 6.98 -51.93 -0.36 0.94 16 30 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 31 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 273.99 15.07 4.13 4.13 Total: -1.00 -31.62 273.99 -6.49 -38.12 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -3.59 Total: 14.05 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.05 Total: 5.08 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.05 Total: -61.07 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.62 -6.49 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160585151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.038 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds