Wall clock time and date at job start Sun Mar 29 2020 21:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37100 * 119.99970 * 2 1 4 4 H 1.08001 * 119.99776 * 203.33442 * 3 2 1 5 5 C 1.38950 * 120.00102 * 23.33194 * 3 2 1 6 6 N 1.31408 * 119.99976 * 11.44571 * 5 3 2 7 7 Si 1.86799 * 119.99899 * 191.44056 * 5 3 2 8 8 H 1.48504 * 109.46901 * 84.94797 * 7 5 3 9 9 H 1.48500 * 109.46941 * 204.94142 * 7 5 3 10 10 H 1.48498 * 109.47495 * 324.94779 * 7 5 3 11 11 C 1.34780 * 120.00201 * 180.02562 * 2 1 3 12 12 O 1.21289 * 119.99969 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99522 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.47570 * 39.99913 * 13 11 2 15 15 N 1.46906 * 109.47223 * 160.00323 * 13 11 2 16 16 C 1.53000 * 109.47297 * 280.00078 * 13 11 2 17 17 C 1.50702 * 109.47377 * 175.00295 * 16 13 11 18 18 C 1.34672 * 126.58956 * 84.97635 * 17 16 13 19 19 N 1.34132 * 108.01828 * 180.02562 * 18 17 16 20 20 C 1.30501 * 109.25242 * 359.97438 * 19 18 17 21 21 N 1.35038 * 108.70717 * 359.97438 * 20 19 18 22 22 H 0.96996 * 126.40374 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47084 * 271.25030 * 1 2 3 24 24 H 1.09004 * 109.47078 * 31.24508 * 1 2 3 25 25 H 1.08999 * 109.47174 * 151.24520 * 1 2 3 26 26 H 0.96999 * 120.00134 * 179.97438 * 6 5 3 27 27 H 1.00898 * 110.99900 * 296.04683 * 15 13 11 28 28 H 1.00902 * 110.99566 * 59.99731 * 15 13 11 29 29 H 1.09006 * 109.47095 * 54.99984 * 16 13 11 30 30 H 1.09007 * 109.47342 * 295.00674 * 16 13 11 31 31 H 1.07994 * 125.99180 * 0.02562 * 18 17 16 32 32 H 1.08002 * 125.64497 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1642 1.2255 -0.3705 5 6 1.5410 2.3415 0.4766 6 7 0.4037 2.2620 1.1302 7 14 2.3382 4.0060 0.1883 8 1 1.9437 4.5189 -1.1483 9 1 1.8894 4.9579 1.2360 10 1 3.8153 3.8645 0.2479 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 1 0.5217 -2.3932 -0.6607 15 7 2.2675 -3.5470 -0.4747 16 6 0.9140 -2.7890 1.4202 17 6 0.0571 -4.0285 1.4005 18 6 0.4883 -5.3034 1.4514 19 7 -0.5853 -6.1064 1.4100 20 6 -1.6653 -5.3776 1.3360 21 7 -1.3091 -4.0750 1.3284 22 1 -1.9090 -3.3145 1.2795 23 1 -0.3633 0.0224 1.0274 24 1 -0.3633 0.8786 -0.5331 25 1 -0.3633 -0.9009 -0.4944 26 1 -0.0216 3.0677 1.4632 27 1 2.5408 -3.3937 -1.4338 28 1 3.0763 -3.6404 0.1213 29 1 0.3324 -1.9513 1.8053 30 1 1.7795 -2.9557 2.0616 31 1 1.5179 -5.6230 1.5145 32 1 -2.6765 -5.7539 1.2886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160585151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:16 Heat of formation + Delta-G solvation = 5.424375 kcal Electronic energy + Delta-G solvation = -17058.444856 eV Core-core repulsion = 14247.229951 eV Total energy + Delta-G solvation = -2811.214904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.81620 -40.65732 -36.93528 -36.04285 -33.61240 -33.30470 -31.61135 -28.90296 -27.89298 -26.59954 -24.32278 -22.25080 -21.63200 -20.54081 -18.96117 -18.77954 -18.05987 -16.87860 -16.69204 -16.24685 -15.69778 -15.57921 -15.24112 -14.84800 -14.36581 -14.18048 -13.93456 -13.57373 -13.40867 -13.16680 -12.83944 -12.70379 -12.61070 -12.18609 -12.10074 -11.05976 -10.89909 -10.80939 -10.79346 -9.73401 -9.61834 -9.14131 -8.36582 -6.03038 1.22683 1.35664 1.39454 1.50096 1.94419 2.24693 2.37865 2.41453 3.04469 3.06234 3.57649 3.84435 3.99802 4.06439 4.18685 4.33427 4.51438 4.61933 4.75768 4.86648 4.91768 5.00695 5.33927 5.40845 5.44458 5.92120 5.98658 6.13164 6.42561 6.48487 6.70982 7.12206 7.27194 7.42649 7.96491 8.63682 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.042288 B = 0.006221 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.960709 B = 4499.991937 C = 4985.415323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.454 5.454 3 C -0.348 4.348 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.892 5.892 7 Si 0.986 3.014 8 H -0.266 1.266 9 H -0.272 1.272 10 H -0.279 1.279 11 C 0.403 3.597 12 O -0.635 6.635 13 C 0.105 3.895 14 H 0.100 0.900 15 N -0.805 5.805 16 C -0.020 4.020 17 C -0.006 4.006 18 C -0.021 4.021 19 N -0.538 5.538 20 C 0.187 3.813 21 N -0.560 5.560 22 H 0.432 0.568 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.274 0.726 27 H 0.341 0.659 28 H 0.344 0.656 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 -7.572 -0.113 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.172 5.172 3 C -0.476 4.476 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.531 5.531 7 Si 0.810 3.190 8 H -0.191 1.191 9 H -0.197 1.197 10 H -0.204 1.204 11 C 0.191 3.809 12 O -0.523 6.523 13 C -0.011 4.011 14 H 0.118 0.882 15 N -0.332 5.332 16 C -0.059 4.059 17 C -0.122 4.122 18 C -0.168 4.168 19 N -0.258 5.258 20 C -0.096 4.096 21 N -0.165 5.165 22 H 0.272 0.728 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.180 0.820 32 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.285 -8.803 0.141 12.089 hybrid contribution 0.961 3.048 -0.249 3.206 sum -7.324 -5.754 -0.108 9.315 Atomic orbital electron populations 1.21523 0.79419 0.99984 1.01363 1.43923 1.06748 1.04761 1.61812 1.19590 0.99667 0.86256 1.42103 0.91407 1.26018 0.96973 1.02671 0.94356 1.70017 1.18162 1.30627 1.34249 0.85056 0.78170 0.77252 0.78529 1.19137 1.19665 1.20374 1.22246 0.88581 0.87359 0.82717 1.90480 1.16078 1.87917 1.57833 1.21249 0.96136 0.85802 0.97951 0.88240 1.59281 1.23624 1.42648 1.07658 1.19743 0.98024 0.93378 0.94797 1.20748 0.83706 0.96944 1.10830 1.22031 0.98331 0.88823 1.07650 1.70244 0.98812 1.35268 1.21516 1.25653 1.00957 0.79129 1.03891 1.43248 1.06669 1.10385 1.56206 0.72833 0.92802 0.92982 0.91700 0.91595 0.84674 0.84338 0.90381 0.90202 0.82015 0.73887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.87 7.81 127.77 1.00 5.87 16 2 N -0.45 -22.30 3.02 -658.89 -1.99 -24.29 16 3 C -0.35 -19.26 9.27 84.04 0.78 -18.48 16 4 H 0.07 4.07 7.42 -2.91 -0.02 4.05 16 5 C 0.00 0.11 5.10 84.93 0.43 0.55 16 6 N -0.89 -45.12 10.67 21.66 0.23 -44.89 16 7 Si 0.99 41.43 29.57 68.60 2.03 43.46 16 8 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 C 0.40 18.64 6.87 87.66 0.60 19.24 16 12 O -0.63 -34.39 15.95 -3.06 -0.05 -34.44 16 13 C 0.10 3.56 2.40 44.17 0.11 3.66 16 14 H 0.10 3.14 6.30 -2.39 -0.02 3.12 16 15 N -0.80 -25.28 8.46 -171.80 -1.45 -26.73 16 16 C -0.02 -0.60 5.33 29.85 0.16 -0.44 16 17 C -0.01 -0.17 6.29 40.95 0.26 0.08 16 18 C -0.02 -0.63 11.51 83.52 0.96 0.33 16 19 N -0.54 -15.51 11.25 -200.31 -2.25 -17.77 16 20 C 0.19 3.89 13.04 180.26 2.35 6.25 16 21 N -0.56 -11.63 6.15 -186.49 -1.15 -12.77 16 22 H 0.43 6.39 8.96 -92.71 -0.83 5.55 16 23 H 0.05 2.22 7.15 -2.39 -0.02 2.20 16 24 H 0.05 2.28 7.06 -2.38 -0.02 2.26 16 25 H 0.06 2.07 5.89 -2.39 -0.01 2.06 16 26 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 27 H 0.34 10.56 9.06 -89.70 -0.81 9.75 16 28 H 0.34 11.20 8.58 -89.69 -0.77 10.44 16 29 H 0.08 2.42 6.98 -2.38 -0.02 2.41 16 30 H 0.08 2.57 8.14 -2.38 -0.02 2.56 16 31 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 32 H 0.25 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -68.76 273.99 0.79 -67.98 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.23 Total: 32.40 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.65 Total: 17.06 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.61 Total: -126.45 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.05 Total: -34.44 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.76 0.79 -67.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160585151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.403 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds