Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47350 * 2 1 4 4 H 1.08996 * 109.47042 * 305.73580 * 3 2 1 5 5 C 1.50702 * 109.47249 * 185.73700 * 3 2 1 6 6 H 1.08002 * 119.99414 * 335.21132 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21474 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48498 * 109.47075 * 89.99548 * 9 7 5 11 11 H 1.48496 * 109.47199 * 210.00114 * 9 7 5 12 12 H 1.48502 * 109.46689 * 329.99733 * 9 7 5 13 13 N 1.46499 * 109.47397 * 65.73584 * 3 2 1 14 14 C 1.39153 * 119.99829 * 275.00679 * 13 3 2 15 15 N 1.32358 * 119.71694 * 359.97438 * 14 13 3 16 16 C 1.31982 * 121.64533 * 179.97438 * 15 14 13 17 17 C 1.38024 * 120.90163 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.32956 * 180.02562 * 17 16 15 19 19 C 1.38865 * 119.34490 * 359.97438 * 17 16 15 20 20 C 1.38493 * 118.48202 * 359.74612 * 19 17 16 21 21 F 1.35096 * 120.47226 * 180.26596 * 20 19 17 22 22 H 1.09004 * 109.47249 * 60.00027 * 1 2 3 23 23 H 1.09001 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46835 * 300.00273 * 1 2 3 25 25 H 1.09004 * 109.46835 * 239.99727 * 2 1 3 26 26 H 1.08995 * 109.46884 * 120.00462 * 2 1 3 27 27 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 28 28 H 0.96999 * 119.99820 * 94.99477 * 13 3 2 29 29 H 1.08005 * 119.54940 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.46830 * 90.00328 * 18 17 16 31 31 H 1.09007 * 109.46954 * 210.00217 * 18 17 16 32 32 H 1.08998 * 109.47069 * 330.00020 * 18 17 16 33 33 H 1.07992 * 120.76014 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5953 1.9850 -0.8341 5 6 3.5404 1.4448 -0.1420 6 1 4.1135 0.5838 0.1690 7 6 4.1813 2.5459 -0.6689 8 7 3.4787 3.5590 -1.1270 9 14 6.0475 2.6023 -0.7253 10 1 6.5218 2.0225 -2.0075 11 1 6.5036 4.0116 -0.6204 12 1 6.6008 1.8174 0.4075 13 7 1.6678 2.0921 1.2592 14 6 0.4124 2.6768 1.3958 15 7 -0.4406 2.6432 0.3843 16 6 -1.6408 3.1851 0.4724 17 6 -2.0524 3.8116 1.6314 18 6 -3.4259 4.4255 1.7180 19 6 -1.1887 3.8697 2.7171 20 6 0.0622 3.2874 2.5979 21 9 0.9324 3.3157 3.6309 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.5137 3.5639 -1.0286 28 1 2.2962 2.1145 1.9977 29 1 -2.3101 3.1376 -0.3740 30 1 -4.1332 3.6827 2.0869 31 1 -3.4018 5.2749 2.4008 32 1 -3.7361 4.7630 0.7291 33 1 -1.4872 4.3538 3.6351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161047778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -23.019106 kcal Electronic energy + Delta-G solvation = -17171.962484 eV Core-core repulsion = 14339.594216 eV Total energy + Delta-G solvation = -2832.368268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.29930 -39.65608 -36.40432 -33.30764 -32.03440 -31.64145 -30.00388 -27.08325 -25.28036 -23.47963 -22.76795 -21.39909 -19.98746 -17.78239 -16.83365 -16.41570 -16.30018 -15.38572 -14.39925 -14.17086 -13.84227 -13.75529 -13.34524 -13.13784 -13.03163 -12.56281 -12.41742 -12.24018 -12.09794 -11.52688 -11.02242 -10.83063 -10.76349 -10.45310 -10.20035 -10.04309 -9.27301 -9.01128 -8.97245 -8.72219 -8.45119 -6.70351 -6.55006 -4.36553 1.58808 1.82935 3.34358 3.38080 3.54385 4.06087 4.27877 4.39406 4.70967 4.98131 5.09169 5.29692 5.37155 5.46130 5.73897 5.77320 6.00751 6.04040 6.07643 6.14088 6.26951 6.31712 6.56178 6.69060 6.84696 6.92398 6.98063 7.15774 7.36233 7.76414 8.12078 8.27893 8.38527 8.67195 8.96892 9.44356 10.81894 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.007625 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131896 B = 3671.365949 C = 3953.637392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.247 3.753 4 H 0.060 0.940 5 C -0.609 4.609 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 1.071 2.929 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.392 3.608 15 N -0.511 5.511 16 C 0.146 3.854 17 C -0.215 4.215 18 C -0.090 4.090 19 C -0.065 4.065 20 C -0.050 4.050 21 F -0.144 7.144 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.150 0.850 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -0.268 5.108 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.147 3.853 4 H 0.078 0.922 5 C -0.648 4.648 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.899 3.101 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.311 5.311 14 C 0.150 3.850 15 N -0.229 5.229 16 C -0.015 4.015 17 C -0.221 4.221 18 C -0.148 4.148 19 C -0.091 4.091 20 C -0.078 4.078 21 F -0.123 7.123 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.233 0.767 29 H 0.168 0.832 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.059 0.095 3.643 8.845 hybrid contribution -1.158 -0.437 1.907 2.274 sum -9.217 -0.342 5.550 10.765 Atomic orbital electron populations 1.21843 0.97149 0.98360 1.02058 1.21827 0.94257 0.99273 1.00297 1.18968 0.94878 0.88552 0.82892 0.92187 1.22173 0.91267 1.04186 1.47179 0.92607 1.26018 1.07244 0.92440 0.92033 1.70719 1.09811 1.32154 1.39448 0.83517 0.73799 0.76200 0.76590 1.21121 1.20909 1.21224 1.47025 1.09515 1.55789 1.18744 1.18966 0.88943 0.89621 0.87421 1.67604 1.03742 1.23039 1.28523 1.22340 0.91748 0.91336 0.96044 1.20210 0.98401 1.08179 0.95346 1.20455 0.92667 0.99572 1.02073 1.21072 0.91504 0.97359 0.99197 1.18082 0.90972 1.12025 0.86713 1.91404 1.68661 1.95617 1.56654 0.92437 0.95519 0.93552 0.92357 0.93959 0.91012 0.76732 0.83227 0.92176 0.92322 0.91886 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.46 37.16 0.31 -2.34 16 2 C -0.12 -2.54 5.58 -26.73 -0.15 -2.69 16 3 C 0.25 6.05 1.95 -69.08 -0.13 5.92 16 4 H 0.06 1.64 6.08 -51.93 -0.32 1.32 16 5 C -0.61 -16.29 8.50 -34.44 -0.29 -16.58 16 6 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.03 0.88 5.46 -17.82 -0.10 0.78 16 8 N -0.89 -26.12 13.63 55.43 0.76 -25.36 16 9 Si 1.07 24.27 29.91 -169.99 -5.08 19.18 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.68 -15.67 5.16 -54.98 -0.28 -15.95 16 14 C 0.39 8.30 6.08 -154.85 -0.94 7.36 16 15 N -0.51 -10.28 6.42 -12.36 -0.08 -10.36 16 16 C 0.15 2.38 10.84 -17.57 -0.19 2.19 16 17 C -0.22 -3.16 5.90 -104.47 -0.62 -3.78 16 18 C -0.09 -0.95 10.03 36.01 0.36 -0.59 16 19 C -0.07 -1.04 9.84 -39.26 -0.39 -1.43 16 20 C -0.05 -0.97 7.35 -39.09 -0.29 -1.25 16 21 F -0.14 -2.80 16.65 2.25 0.04 -2.77 16 22 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.93 5.57 -51.93 -0.29 0.64 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.28 8.33 6.66 -40.82 -0.27 8.06 16 28 H 0.40 9.03 8.06 -40.82 -0.33 8.70 16 29 H 0.15 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -28.91 279.85 -7.05 -35.95 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.19 Total: 7.50 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.42 Total: -12.41 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.39 Total: -51.68 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.91 -7.05 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161047778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.935 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds