Wall clock time and date at job start Sun Mar 29 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47350 * 2 1 4 4 H 1.08996 * 109.47042 * 305.73580 * 3 2 1 5 5 C 1.50702 * 109.47249 * 185.73700 * 3 2 1 6 6 H 1.08002 * 119.99414 * 335.21132 * 5 3 2 7 7 C 1.37872 * 120.00319 * 155.21474 * 5 3 2 8 8 N 1.31523 * 119.99648 * 355.61998 * 7 5 3 9 9 Si 1.86797 * 120.00405 * 175.34956 * 7 5 3 10 10 H 1.48498 * 109.47075 * 89.99548 * 9 7 5 11 11 H 1.48496 * 109.47199 * 210.00114 * 9 7 5 12 12 H 1.48502 * 109.46689 * 329.99733 * 9 7 5 13 13 N 1.46499 * 109.47397 * 65.73584 * 3 2 1 14 14 C 1.39153 * 119.99829 * 275.00679 * 13 3 2 15 15 N 1.32358 * 119.71694 * 359.97438 * 14 13 3 16 16 C 1.31982 * 121.64533 * 179.97438 * 15 14 13 17 17 C 1.38024 * 120.90163 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.32956 * 180.02562 * 17 16 15 19 19 C 1.38865 * 119.34490 * 359.97438 * 17 16 15 20 20 C 1.38493 * 118.48202 * 359.74612 * 19 17 16 21 21 F 1.35096 * 120.47226 * 180.26596 * 20 19 17 22 22 H 1.09004 * 109.47249 * 60.00027 * 1 2 3 23 23 H 1.09001 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46835 * 300.00273 * 1 2 3 25 25 H 1.09004 * 109.46835 * 239.99727 * 2 1 3 26 26 H 1.08995 * 109.46884 * 120.00462 * 2 1 3 27 27 H 0.96997 * 119.99869 * 5.00072 * 8 7 5 28 28 H 0.96999 * 119.99820 * 94.99477 * 13 3 2 29 29 H 1.08005 * 119.54940 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.46830 * 90.00328 * 18 17 16 31 31 H 1.09007 * 109.46954 * 210.00217 * 18 17 16 32 32 H 1.08998 * 109.47069 * 330.00020 * 18 17 16 33 33 H 1.07992 * 120.76014 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5953 1.9850 -0.8341 5 6 3.5404 1.4448 -0.1420 6 1 4.1135 0.5838 0.1690 7 6 4.1813 2.5459 -0.6689 8 7 3.4787 3.5590 -1.1270 9 14 6.0475 2.6023 -0.7253 10 1 6.5218 2.0225 -2.0075 11 1 6.5036 4.0116 -0.6204 12 1 6.6008 1.8174 0.4075 13 7 1.6678 2.0921 1.2592 14 6 0.4124 2.6768 1.3958 15 7 -0.4406 2.6432 0.3843 16 6 -1.6408 3.1851 0.4724 17 6 -2.0524 3.8116 1.6314 18 6 -3.4259 4.4255 1.7180 19 6 -1.1887 3.8697 2.7171 20 6 0.0622 3.2874 2.5979 21 9 0.9324 3.3157 3.6309 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.5137 3.5639 -1.0286 28 1 2.2962 2.1145 1.9977 29 1 -2.3101 3.1376 -0.3740 30 1 -4.1332 3.6827 2.0869 31 1 -3.4018 5.2749 2.4008 32 1 -3.7361 4.7630 0.7291 33 1 -1.4872 4.3538 3.6351 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161047778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:54 Heat of formation + Delta-G solvation = -39.588001 kcal Electronic energy + Delta-G solvation = -17172.680966 eV Core-core repulsion = 14339.594216 eV Total energy + Delta-G solvation = -2833.086749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.78395 -41.09172 -38.10164 -34.94552 -33.79071 -33.16061 -31.37536 -28.74852 -26.72109 -25.18325 -24.38896 -22.77697 -21.74242 -19.53235 -18.50015 -17.95799 -17.74755 -16.89085 -16.00226 -15.77982 -15.64064 -15.35447 -14.89645 -14.45582 -14.42199 -14.15293 -13.80516 -13.48993 -13.37352 -12.83639 -12.62220 -12.60649 -12.49723 -12.16093 -11.95975 -11.69440 -10.98537 -10.70999 -10.52296 -10.40448 -10.26107 -8.71846 -8.26000 -6.52208 0.20546 0.46721 1.51428 1.58550 1.77231 2.42904 2.53790 2.87466 3.19432 3.34862 3.68529 3.87700 4.12750 4.29477 4.32271 4.38114 4.55929 4.67870 4.82726 4.96049 4.96686 4.98240 5.12317 5.22386 5.23726 5.33586 5.39857 5.52800 5.78367 5.85150 6.11270 6.46084 6.51020 6.73421 7.36352 7.38668 8.65217 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.007625 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131896 B = 3671.365949 C = 3953.637392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.257 3.743 4 H 0.026 0.974 5 C -0.620 4.620 6 H 0.053 0.947 7 C -0.016 4.016 8 N -0.919 5.919 9 Si 1.118 2.882 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.702 5.702 14 C 0.364 3.636 15 N -0.535 5.535 16 C 0.131 3.869 17 C -0.190 4.190 18 C -0.089 4.089 19 C -0.062 4.062 20 C -0.070 4.070 21 F -0.151 7.151 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.261 0.739 28 H 0.392 0.608 29 H 0.181 0.819 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 -0.055 5.841 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.155 3.845 4 H 0.044 0.956 5 C -0.658 4.658 6 H 0.071 0.929 7 C -0.218 4.218 8 N -0.554 5.554 9 Si 0.939 3.061 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.330 5.330 14 C 0.126 3.874 15 N -0.252 5.252 16 C -0.028 4.028 17 C -0.196 4.196 18 C -0.146 4.146 19 C -0.088 4.088 20 C -0.098 4.098 21 F -0.131 7.131 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.228 0.772 29 H 0.198 0.802 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.908 0.305 4.386 10.840 hybrid contribution -0.840 -0.466 1.722 1.972 sum -10.748 -0.161 6.108 12.364 Atomic orbital electron populations 1.21666 0.95203 0.99668 1.01316 1.21755 0.95994 0.97494 1.00051 1.18649 0.93541 0.89622 0.82655 0.95567 1.22482 0.92763 1.03901 1.46660 0.92876 1.27371 1.11018 0.92020 0.91358 1.70848 1.08886 1.33525 1.42172 0.82928 0.69152 0.76207 0.77764 1.19601 1.21311 1.19398 1.46327 1.10841 1.58035 1.17830 1.19030 0.88633 0.91003 0.88761 1.67556 1.05052 1.23873 1.28762 1.22996 0.90926 0.90983 0.97941 1.20752 0.99845 1.05255 0.93718 1.20583 0.89883 1.00378 1.03783 1.21514 0.90065 0.96343 1.00925 1.18340 0.92276 1.13011 0.86145 1.91377 1.69182 1.95774 1.56723 0.93116 0.93013 0.94273 0.92712 0.93869 0.92799 0.77242 0.80204 0.90181 0.90715 0.90223 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.46 71.98 0.61 -4.05 16 2 C -0.11 -5.01 5.58 30.59 0.17 -4.84 16 3 C 0.26 13.06 1.95 44.24 0.09 13.14 16 4 H 0.03 1.51 6.08 -2.39 -0.01 1.50 16 5 C -0.62 -34.09 8.50 25.60 0.22 -33.87 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C -0.02 -0.87 5.46 84.65 0.46 -0.41 16 8 N -0.92 -55.98 13.63 21.45 0.29 -55.69 16 9 Si 1.12 49.44 29.91 68.60 2.05 51.49 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 13 N -0.70 -33.40 5.16 -327.87 -1.69 -35.09 16 14 C 0.36 15.71 6.08 133.06 0.81 16.52 16 15 N -0.53 -21.55 6.42 -193.03 -1.24 -22.79 16 16 C 0.13 4.02 10.84 84.62 0.92 4.94 16 17 C -0.19 -4.96 5.90 -19.76 -0.12 -5.08 16 18 C -0.09 -1.44 10.03 71.24 0.71 -0.73 16 19 C -0.06 -1.84 9.84 22.48 0.22 -1.61 16 20 C -0.07 -2.69 7.35 22.59 0.17 -2.52 16 21 F -0.15 -5.92 16.65 44.97 0.75 -5.18 16 22 H 0.05 1.99 7.72 -2.39 -0.02 1.97 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.55 5.57 -2.38 -0.01 1.54 16 25 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.26 16.46 6.66 -92.71 -0.62 15.84 16 28 H 0.39 18.76 8.06 -92.71 -0.75 18.02 16 29 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 32 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -65.00 279.85 4.94 -60.06 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.52 Total: 25.71 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.26 Total: -18.52 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -2.64 Total: -113.57 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.75 Total: -5.18 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -65.00 4.94 -60.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161047778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.471 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds