Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47393 * 2 1 4 4 C 1.46896 * 111.00401 * 287.82939 * 3 2 1 5 5 C 1.50699 * 109.47118 * 160.28439 * 4 3 2 6 6 H 1.07992 * 120.00253 * 4.77681 * 5 4 3 7 7 C 1.37885 * 119.99620 * 184.77848 * 5 4 3 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99594 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46975 * 60.00285 * 9 7 5 11 11 H 1.48493 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47519 * 300.00314 * 9 7 5 13 13 C 1.39155 * 111.00111 * 163.87200 * 3 2 1 14 14 N 1.32359 * 119.71603 * 123.97690 * 13 3 2 15 15 C 1.31982 * 121.64960 * 179.97438 * 14 13 3 16 16 C 1.38034 * 120.89502 * 359.74240 * 15 14 13 17 17 C 1.38863 * 119.34286 * 0.50963 * 16 15 14 18 18 C 1.50700 * 120.75550 * 179.77822 * 17 16 15 19 19 C 1.38490 * 118.48481 * 359.50266 * 17 16 15 20 20 F 1.35101 * 120.46456 * 180.22394 * 19 17 16 21 21 H 1.08998 * 109.47323 * 179.26363 * 1 2 3 22 22 H 1.08997 * 109.47255 * 299.26152 * 1 2 3 23 23 H 1.09005 * 109.47301 * 59.26048 * 1 2 3 24 24 H 1.09006 * 109.46883 * 240.00619 * 2 1 3 25 25 H 1.08995 * 109.47159 * 120.00687 * 2 1 3 26 26 H 1.09000 * 109.47349 * 280.28443 * 4 3 2 27 27 H 1.09005 * 109.46958 * 40.28621 * 4 3 2 28 28 H 0.97007 * 119.99471 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.54923 * 180.02562 * 15 14 13 30 30 H 1.07990 * 120.32603 * 180.28980 * 16 15 14 31 31 H 1.09007 * 109.46628 * 269.72368 * 18 17 16 32 32 H 1.08995 * 109.47116 * 149.72240 * 18 17 16 33 33 H 1.08997 * 109.47160 * 29.71468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7993 2.0213 -1.3055 5 6 1.8485 3.5193 -1.1488 6 1 2.1018 3.9543 -0.1934 7 6 1.5699 4.3346 -2.2254 8 7 1.2609 3.8049 -3.3887 9 14 1.6301 6.1915 -2.0309 10 1 2.9952 6.6015 -1.6141 11 1 1.2941 6.8359 -3.3259 12 1 0.6498 6.6132 -0.9984 13 6 3.3625 1.4391 0.3609 14 7 4.2367 2.0155 -0.4487 15 6 5.5189 2.0886 -0.1443 16 6 5.9969 1.5670 1.0409 17 6 5.1146 0.9486 1.9170 18 6 5.6028 0.3638 3.2173 19 6 3.7750 0.8866 1.5712 20 9 2.8812 0.2982 2.3959 21 1 -0.3634 -1.0275 -0.0132 22 1 -0.3633 0.5023 0.8965 23 1 -0.3634 0.5253 -0.8833 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.5763 1.7031 -2.0006 27 1 0.8233 1.7283 -1.6924 28 1 1.0654 4.3785 -4.1462 29 1 6.2026 2.5670 -0.8299 30 1 7.0471 1.6360 1.2828 31 1 5.8826 -0.6786 3.0645 32 1 4.8093 0.4216 3.9623 33 1 6.4697 0.9253 3.5655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = 1.685251 kcal Electronic energy + Delta-G solvation = -17225.492196 eV Core-core repulsion = 14394.195189 eV Total energy + Delta-G solvation = -2831.297007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.51736 -39.82613 -36.87033 -33.32332 -32.58090 -30.78019 -28.94497 -27.73151 -26.38792 -23.05296 -22.76983 -21.70894 -19.98568 -17.13306 -16.89678 -16.66391 -15.92807 -15.41040 -14.58461 -14.37434 -14.03428 -13.60196 -13.50100 -13.24651 -12.81867 -12.72295 -12.28023 -12.07298 -11.86454 -11.42779 -11.40429 -11.32213 -10.83132 -10.65529 -10.26782 -9.80383 -9.48757 -9.16469 -8.90964 -8.71943 -8.28800 -7.25534 -5.93014 -3.89974 1.45991 1.58602 3.39694 3.42419 3.46393 4.05677 4.22965 4.52919 4.71292 4.82832 4.99558 5.28876 5.35429 5.44602 5.54486 5.54885 5.67647 5.73431 5.88997 5.96378 6.07882 6.15016 6.27213 6.38130 6.44066 6.68834 6.88281 7.13329 7.42338 7.66432 8.03727 8.10071 8.44308 8.68550 9.10072 9.69512 11.18608 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.008841 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.634505 B = 3166.272251 C = 3908.113559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.472 5.472 4 C 0.195 3.805 5 C -0.481 4.481 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.322 3.678 14 N -0.461 5.461 15 C 0.120 3.880 16 C -0.202 4.202 17 C -0.064 4.064 18 C -0.109 4.109 19 C 0.003 3.997 20 F -0.132 7.132 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -7.962 9.205 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.188 5.188 4 C 0.072 3.928 5 C -0.520 4.520 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.543 5.543 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.087 3.913 14 N -0.174 5.174 15 C -0.039 4.039 16 C -0.224 4.224 17 C -0.073 4.073 18 C -0.166 4.166 19 C -0.022 4.022 20 F -0.111 7.111 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.463 -7.334 8.569 13.000 hybrid contribution 0.566 0.461 0.427 0.846 sum 7.028 -6.873 8.996 13.326 Atomic orbital electron populations 1.21754 0.94201 1.00797 1.03385 1.22258 0.97079 0.87501 1.01147 1.59305 1.08985 1.15288 1.35232 1.19913 0.97115 0.94661 0.81144 1.20850 1.45016 0.90064 0.96105 0.92767 1.24851 0.95800 0.98588 0.95144 1.69929 1.48368 1.35092 1.00904 0.86597 0.78404 0.85601 0.76989 1.20418 1.21397 1.20441 1.20144 0.90535 0.91459 0.89182 1.68041 1.01943 1.16315 1.31120 1.22692 0.91806 0.94778 0.94634 1.21681 1.00182 1.04154 0.96366 1.20121 0.91430 0.98151 0.97596 1.20678 1.01795 1.00783 0.93357 1.18066 0.87175 1.05566 0.91394 1.91366 1.67045 1.81885 1.70771 0.92721 0.92041 0.91525 0.94255 0.90417 0.95959 0.94232 0.93036 0.82753 0.84973 0.90765 0.91123 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.99 37.15 0.37 -2.08 16 2 C 0.05 0.87 5.39 -3.83 -0.02 0.85 16 3 N -0.47 -10.84 4.37 -174.48 -0.76 -11.61 16 4 C 0.19 5.18 4.23 -4.98 -0.02 5.16 16 5 C -0.48 -13.99 8.36 -34.44 -0.29 -14.28 16 6 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 13 C 0.32 7.00 6.14 -154.85 -0.95 6.05 16 14 N -0.46 -10.21 7.90 -12.36 -0.10 -10.31 16 15 C 0.12 2.07 11.17 -17.56 -0.20 1.88 16 16 C -0.20 -2.91 9.81 -39.42 -0.39 -3.30 16 17 C -0.06 -0.98 5.92 -104.30 -0.62 -1.60 16 18 C -0.11 -1.22 9.90 36.01 0.36 -0.86 16 19 C 0.00 0.06 6.84 -39.10 -0.27 -0.21 16 20 F -0.13 -2.36 14.18 2.25 0.03 -2.33 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.07 1.25 6.53 -51.93 -0.34 0.91 16 24 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 25 H 0.08 1.36 5.40 -51.93 -0.28 1.08 16 26 H 0.02 0.64 7.25 -51.93 -0.38 0.27 16 27 H 0.04 1.09 6.25 -51.93 -0.32 0.77 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.07 0.80 7.72 -51.93 -0.40 0.40 16 33 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -32.02 279.76 -7.23 -39.25 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.22 Total: -3.39 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.12 Total: -6.85 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.12 Total: -48.36 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.03 Total: -2.33 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.02 -7.23 -39.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.940 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds