Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47393 * 2 1 4 4 C 1.46896 * 111.00401 * 287.82939 * 3 2 1 5 5 C 1.50699 * 109.47118 * 160.28439 * 4 3 2 6 6 H 1.07992 * 120.00253 * 4.77681 * 5 4 3 7 7 C 1.37885 * 119.99620 * 184.77848 * 5 4 3 8 8 N 1.31509 * 119.99993 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99594 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46975 * 60.00285 * 9 7 5 11 11 H 1.48493 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47519 * 300.00314 * 9 7 5 13 13 C 1.39155 * 111.00111 * 163.87200 * 3 2 1 14 14 N 1.32359 * 119.71603 * 123.97690 * 13 3 2 15 15 C 1.31982 * 121.64960 * 179.97438 * 14 13 3 16 16 C 1.38034 * 120.89502 * 359.74240 * 15 14 13 17 17 C 1.38863 * 119.34286 * 0.50963 * 16 15 14 18 18 C 1.50700 * 120.75550 * 179.77822 * 17 16 15 19 19 C 1.38490 * 118.48481 * 359.50266 * 17 16 15 20 20 F 1.35101 * 120.46456 * 180.22394 * 19 17 16 21 21 H 1.08998 * 109.47323 * 179.26363 * 1 2 3 22 22 H 1.08997 * 109.47255 * 299.26152 * 1 2 3 23 23 H 1.09005 * 109.47301 * 59.26048 * 1 2 3 24 24 H 1.09006 * 109.46883 * 240.00619 * 2 1 3 25 25 H 1.08995 * 109.47159 * 120.00687 * 2 1 3 26 26 H 1.09000 * 109.47349 * 280.28443 * 4 3 2 27 27 H 1.09005 * 109.46958 * 40.28621 * 4 3 2 28 28 H 0.97007 * 119.99471 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.54923 * 180.02562 * 15 14 13 30 30 H 1.07990 * 120.32603 * 180.28980 * 16 15 14 31 31 H 1.09007 * 109.46628 * 269.72368 * 18 17 16 32 32 H 1.08995 * 109.47116 * 149.72240 * 18 17 16 33 33 H 1.08997 * 109.47160 * 29.71468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7993 2.0213 -1.3055 5 6 1.8485 3.5193 -1.1488 6 1 2.1018 3.9543 -0.1934 7 6 1.5699 4.3346 -2.2254 8 7 1.2609 3.8049 -3.3887 9 14 1.6301 6.1915 -2.0309 10 1 2.9952 6.6015 -1.6141 11 1 1.2941 6.8359 -3.3259 12 1 0.6498 6.6132 -0.9984 13 6 3.3625 1.4391 0.3609 14 7 4.2367 2.0155 -0.4487 15 6 5.5189 2.0886 -0.1443 16 6 5.9969 1.5670 1.0409 17 6 5.1146 0.9486 1.9170 18 6 5.6028 0.3638 3.2173 19 6 3.7750 0.8866 1.5712 20 9 2.8812 0.2982 2.3959 21 1 -0.3634 -1.0275 -0.0132 22 1 -0.3633 0.5023 0.8965 23 1 -0.3634 0.5253 -0.8833 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.5763 1.7031 -2.0006 27 1 0.8233 1.7283 -1.6924 28 1 1.0654 4.3785 -4.1462 29 1 6.2026 2.5670 -0.8299 30 1 7.0471 1.6360 1.2828 31 1 5.8826 -0.6786 3.0645 32 1 4.8093 0.4216 3.9623 33 1 6.4697 0.9253 3.5655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = -18.468590 kcal Electronic energy + Delta-G solvation = -17226.366132 eV Core-core repulsion = 14394.195189 eV Total energy + Delta-G solvation = -2832.170943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.91280 -41.27406 -38.43966 -34.76902 -34.59057 -32.20666 -30.68546 -28.95505 -28.13426 -24.95447 -24.21493 -23.08817 -21.59755 -18.69348 -18.56654 -18.21757 -17.64179 -16.83566 -16.57373 -15.76095 -15.59025 -15.31320 -14.84227 -14.39019 -14.33781 -13.88454 -13.76967 -13.61854 -13.21170 -13.14597 -12.97488 -12.75085 -12.61473 -12.55865 -12.17657 -11.66324 -11.39843 -10.83873 -10.49769 -10.29255 -10.16276 -8.85980 -8.15745 -6.20798 0.08584 0.28377 1.37110 1.40548 1.48278 2.39561 2.65548 2.81869 3.17642 3.30649 3.60400 3.78073 3.98454 4.04568 4.23235 4.26876 4.49567 4.64163 4.69061 4.77264 4.82559 4.92753 4.97518 5.12343 5.13800 5.21991 5.27501 5.31188 5.59972 5.70351 5.96197 6.28600 6.38964 6.83396 7.23494 7.43044 8.95602 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.008841 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.634505 B = 3166.272251 C = 3908.113559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.045 3.955 3 N -0.489 5.489 4 C 0.218 3.782 5 C -0.492 4.492 6 H 0.039 0.961 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.272 1.272 13 C 0.284 3.716 14 N -0.515 5.515 15 C 0.102 3.898 16 C -0.175 4.175 17 C -0.057 4.057 18 C -0.107 4.107 19 C -0.009 4.009 20 F -0.132 7.132 21 H 0.091 0.909 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.094 0.906 26 H -0.009 1.009 27 H 0.019 0.981 28 H 0.263 0.737 29 H 0.177 0.823 30 H 0.183 0.817 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 -7.972 11.147 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 N -0.205 5.205 4 C 0.093 3.907 5 C -0.530 4.530 6 H 0.057 0.943 7 C -0.192 4.192 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.198 1.198 13 C 0.051 3.949 14 N -0.229 5.229 15 C -0.056 4.056 16 C -0.196 4.196 17 C -0.066 4.066 18 C -0.163 4.163 19 C -0.033 4.033 20 F -0.111 7.111 21 H 0.110 0.890 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.009 0.991 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.200 0.800 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.446 -7.359 10.536 15.379 hybrid contribution 0.107 0.387 -0.123 0.420 sum 8.553 -6.972 10.413 15.173 Atomic orbital electron populations 1.21715 0.92939 1.02748 1.01967 1.22389 0.98137 0.86073 1.01494 1.59338 1.11120 1.17154 1.32919 1.19367 0.94631 0.93899 0.82767 1.21001 1.44990 0.91502 0.95532 0.94281 1.25689 0.95314 1.03414 0.94738 1.70047 1.49047 1.36813 1.01600 0.85563 0.78560 0.79795 0.77405 1.19921 1.20294 1.19758 1.20263 0.90060 0.93758 0.90816 1.67901 1.04170 1.17782 1.33005 1.23221 0.90591 0.95247 0.96536 1.22165 1.02317 1.00915 0.94208 1.20691 0.89861 0.96798 0.99220 1.20815 1.02707 1.02098 0.90667 1.18186 0.88658 1.05910 0.90591 1.91354 1.67382 1.81867 1.70474 0.89025 0.92167 0.94087 0.94959 0.88763 0.99147 0.96328 0.92798 0.80628 0.79969 0.88710 0.91362 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.99 71.98 0.72 -4.01 16 2 C 0.04 1.74 5.39 86.30 0.47 2.20 16 3 N -0.49 -23.40 4.37 -705.92 -3.09 -26.48 16 4 C 0.22 12.29 4.23 85.56 0.36 12.65 16 5 C -0.49 -29.67 8.36 25.60 0.21 -29.46 16 6 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 7 C 0.01 0.34 5.46 84.66 0.46 0.80 16 8 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 9 Si 0.96 46.76 29.54 68.60 2.03 48.79 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.28 12.66 6.14 133.06 0.82 13.47 16 14 N -0.51 -23.33 7.90 -193.03 -1.52 -24.85 16 15 C 0.10 3.40 11.17 84.62 0.95 4.35 16 16 C -0.18 -4.41 9.81 22.37 0.22 -4.20 16 17 C -0.06 -1.56 5.92 -19.65 -0.12 -1.68 16 18 C -0.11 -1.89 9.90 71.24 0.71 -1.18 16 19 C -0.01 -0.31 6.84 22.58 0.15 -0.16 16 20 F -0.13 -4.61 14.18 44.97 0.64 -3.97 16 21 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.61 6.53 -2.38 -0.02 1.60 16 24 H 0.03 1.27 8.05 -2.38 -0.02 1.25 16 25 H 0.09 3.31 5.40 -2.39 -0.01 3.30 16 26 H -0.01 -0.57 7.25 -2.39 -0.02 -0.59 16 27 H 0.02 1.11 6.25 -2.38 -0.01 1.09 16 28 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 29 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.18 2.77 8.06 -2.92 -0.02 2.75 16 31 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.29 7.72 -2.39 -0.02 1.27 16 33 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -72.93 279.76 4.39 -68.54 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.10 Total: 2.78 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.95 Total: -7.21 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -4.33 Total: -108.93 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.64 Total: -3.97 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -72.93 4.39 -68.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.073 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds