Wall clock time and date at job start Sun Mar 29 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46873 * 2 1 4 4 C 1.46901 * 111.00462 * 65.38579 * 3 2 1 5 5 C 1.50701 * 109.46973 * 66.04342 * 4 3 2 6 6 H 1.07993 * 120.00098 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99627 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47135 * 59.99675 * 9 7 5 11 11 H 1.48501 * 109.47343 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46888 * 299.99597 * 9 7 5 13 13 C 1.39148 * 110.99986 * 301.42731 * 3 2 1 14 14 N 1.32368 * 119.71570 * 107.82130 * 13 3 2 15 15 C 1.31974 * 121.64527 * 179.75361 * 14 13 3 16 16 C 1.38035 * 120.90081 * 0.52529 * 15 14 13 17 17 C 1.50697 * 120.32630 * 179.71636 * 16 15 14 18 18 C 1.38860 * 119.34378 * 359.74864 * 16 15 14 19 19 C 1.38487 * 118.48475 * 359.97438 * 18 16 15 20 20 F 1.35100 * 120.47268 * 179.97438 * 19 18 16 21 21 H 1.09003 * 109.47291 * 298.57673 * 1 2 3 22 22 H 1.08997 * 109.47266 * 58.57070 * 1 2 3 23 23 H 1.08996 * 109.47205 * 178.57601 * 1 2 3 24 24 H 1.09000 * 109.47194 * 239.99907 * 2 1 3 25 25 H 1.09001 * 109.47154 * 119.99721 * 2 1 3 26 26 H 1.09007 * 109.46871 * 306.04430 * 4 3 2 27 27 H 1.08998 * 109.47091 * 186.04461 * 4 3 2 28 28 H 0.97001 * 119.99511 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.55402 * 180.26984 * 15 14 13 30 30 H 1.08997 * 109.47740 * 270.02711 * 17 16 15 31 31 H 1.08995 * 109.47456 * 30.03077 * 17 16 15 32 32 H 1.09005 * 109.46516 * 150.02744 * 17 16 15 33 33 H 1.07992 * 120.75741 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6566 2.0718 1.2468 5 6 2.3847 1.4342 2.4019 6 1 3.0508 0.6023 2.2273 7 6 2.2004 1.9129 3.6817 8 7 1.3895 2.9264 3.8942 9 14 3.1034 1.1230 5.1135 10 1 4.5683 1.2337 4.8965 11 1 2.7363 1.8172 6.3739 12 1 2.7239 -0.3096 5.2083 13 6 1.5472 2.0809 -1.1085 14 7 0.6154 3.0081 -0.9529 15 6 0.1436 3.6943 -1.9768 16 6 0.6009 3.4603 -3.2580 17 6 0.0485 4.2470 -4.4186 18 6 1.5744 2.4924 -3.4670 19 6 2.0550 1.7921 -2.3731 20 9 3.0019 0.8414 -2.5304 21 1 -0.3634 0.4916 0.9025 22 1 -0.3634 0.5359 -0.8769 23 1 -0.3633 -1.0273 -0.0255 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5812 1.9913 1.4061 27 1 1.9358 3.1231 1.1770 28 1 1.2602 3.2634 4.7946 29 1 -0.6136 4.4463 -1.8106 30 1 -0.8172 3.7282 -4.8301 31 1 -0.2504 5.2378 -4.0766 32 1 0.8139 4.3441 -5.1887 33 1 1.9488 2.2910 -4.4597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:49 Heat of formation + Delta-G solvation = -3.872122 kcal Electronic energy + Delta-G solvation = -17088.942150 eV Core-core repulsion = 14257.404158 eV Total energy + Delta-G solvation = -2831.537992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.47003 -40.08643 -37.05413 -33.07877 -32.50988 -30.94042 -29.58425 -27.51240 -25.62104 -23.83695 -22.72561 -21.92055 -20.09748 -17.12224 -16.74922 -16.40202 -15.90421 -15.69746 -14.70913 -14.56760 -13.99940 -13.65544 -13.44587 -13.28993 -12.91839 -12.68757 -12.34785 -12.19155 -11.93692 -11.74968 -11.34732 -11.11962 -10.77950 -10.61385 -10.24520 -10.02753 -9.45188 -9.32614 -9.15233 -8.71026 -8.37339 -7.31022 -6.00933 -4.03715 1.29057 1.41090 3.34424 3.38492 3.41275 3.89990 4.17116 4.44313 4.64049 4.83278 4.93163 5.09924 5.24744 5.34328 5.50891 5.54444 5.67117 5.81433 5.88286 5.89179 5.98987 6.12770 6.27850 6.30954 6.56346 6.77068 6.82311 7.25038 7.48811 7.73470 7.89755 8.09941 8.35717 8.51622 9.02833 9.59380 11.09332 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034490 B = 0.006840 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.624876 B = 4092.489348 C = 4434.965112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 N -0.477 5.477 4 C 0.202 3.798 5 C -0.518 4.518 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.303 3.697 14 N -0.479 5.479 15 C 0.111 3.889 16 C -0.157 4.157 17 C -0.100 4.100 18 C -0.101 4.101 19 C 0.035 3.965 20 F -0.128 7.128 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.020 0.980 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -0.613 -14.523 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.061 4.061 3 N -0.195 5.195 4 C 0.078 3.922 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.069 3.931 14 N -0.191 5.191 15 C -0.048 4.048 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.127 4.127 19 C 0.010 3.990 20 F -0.107 7.107 21 H 0.092 0.908 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.172 0.828 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.958 -0.432 -13.477 13.804 hybrid contribution 0.263 -0.533 0.051 0.597 sum -2.695 -0.966 -13.425 13.727 Atomic orbital electron populations 1.22373 0.97771 1.01235 1.02515 1.22089 0.93020 0.88026 1.02958 1.59828 1.53263 1.03059 1.03330 1.19746 0.96222 0.94160 0.82048 1.21137 1.26578 1.16942 0.91045 0.91951 1.24946 0.95415 0.95099 0.98800 1.69975 1.36534 1.24994 1.21630 0.86563 0.80194 0.79316 0.81344 1.20182 1.21312 1.20222 1.20388 0.89031 0.93156 0.90479 1.68098 1.08801 1.08085 1.34133 1.22576 0.97808 0.97081 0.87336 1.20585 0.99375 0.99304 0.96798 1.20606 1.00767 0.99118 0.95270 1.21289 0.97371 0.95842 0.98214 1.18265 0.93310 0.93346 0.94046 1.91465 1.61658 1.61452 1.96140 0.90818 0.93990 0.92731 0.92052 0.88387 0.96236 0.94618 0.92825 0.82777 0.91323 0.91254 0.91689 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 9.35 37.16 0.35 -3.02 16 2 C 0.06 1.31 5.73 -3.82 -0.02 1.28 16 3 N -0.48 -11.01 4.57 -174.46 -0.80 -11.80 16 4 C 0.20 5.42 3.73 -4.97 -0.02 5.40 16 5 C -0.52 -14.68 8.44 -34.44 -0.29 -14.98 16 6 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.30 6.28 4.56 -154.84 -0.71 5.57 16 14 N -0.48 -9.71 8.78 -12.36 -0.11 -9.82 16 15 C 0.11 1.74 10.84 -17.56 -0.19 1.55 16 16 C -0.16 -2.08 5.90 -104.47 -0.62 -2.69 16 17 C -0.10 -0.89 10.03 36.00 0.36 -0.53 16 18 C -0.10 -1.43 9.84 -39.26 -0.39 -1.82 16 19 C 0.03 0.62 7.07 -39.09 -0.28 0.35 16 20 F -0.13 -2.33 16.07 2.25 0.04 -2.30 16 21 H 0.07 1.56 6.48 -51.93 -0.34 1.22 16 22 H 0.04 0.77 7.05 -51.93 -0.37 0.41 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 1.12 7.03 -51.93 -0.37 0.75 16 25 H 0.10 2.05 6.73 -51.93 -0.35 1.70 16 26 H 0.02 0.56 6.13 -51.93 -0.32 0.24 16 27 H 0.04 1.06 7.86 -51.93 -0.41 0.65 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -31.26 279.81 -7.02 -38.28 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.18 Total: -1.98 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.89 Total: -7.28 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.17 Total: -47.63 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.26 -7.02 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.405 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds