Wall clock time and date at job start Sun Mar 29 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46873 * 2 1 4 4 C 1.46901 * 111.00462 * 65.38579 * 3 2 1 5 5 C 1.50701 * 109.46973 * 66.04342 * 4 3 2 6 6 H 1.07993 * 120.00098 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99627 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47135 * 59.99675 * 9 7 5 11 11 H 1.48501 * 109.47343 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46888 * 299.99597 * 9 7 5 13 13 C 1.39148 * 110.99986 * 301.42731 * 3 2 1 14 14 N 1.32368 * 119.71570 * 107.82130 * 13 3 2 15 15 C 1.31974 * 121.64527 * 179.75361 * 14 13 3 16 16 C 1.38035 * 120.90081 * 0.52529 * 15 14 13 17 17 C 1.50697 * 120.32630 * 179.71636 * 16 15 14 18 18 C 1.38860 * 119.34378 * 359.74864 * 16 15 14 19 19 C 1.38487 * 118.48475 * 359.97438 * 18 16 15 20 20 F 1.35100 * 120.47268 * 179.97438 * 19 18 16 21 21 H 1.09003 * 109.47291 * 298.57673 * 1 2 3 22 22 H 1.08997 * 109.47266 * 58.57070 * 1 2 3 23 23 H 1.08996 * 109.47205 * 178.57601 * 1 2 3 24 24 H 1.09000 * 109.47194 * 239.99907 * 2 1 3 25 25 H 1.09001 * 109.47154 * 119.99721 * 2 1 3 26 26 H 1.09007 * 109.46871 * 306.04430 * 4 3 2 27 27 H 1.08998 * 109.47091 * 186.04461 * 4 3 2 28 28 H 0.97001 * 119.99511 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.55402 * 180.26984 * 15 14 13 30 30 H 1.08997 * 109.47740 * 270.02711 * 17 16 15 31 31 H 1.08995 * 109.47456 * 30.03077 * 17 16 15 32 32 H 1.09005 * 109.46516 * 150.02744 * 17 16 15 33 33 H 1.07992 * 120.75741 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6566 2.0718 1.2468 5 6 2.3847 1.4342 2.4019 6 1 3.0508 0.6023 2.2273 7 6 2.2004 1.9129 3.6817 8 7 1.3895 2.9264 3.8942 9 14 3.1034 1.1230 5.1135 10 1 4.5683 1.2337 4.8965 11 1 2.7363 1.8172 6.3739 12 1 2.7239 -0.3096 5.2083 13 6 1.5472 2.0809 -1.1085 14 7 0.6154 3.0081 -0.9529 15 6 0.1436 3.6943 -1.9768 16 6 0.6009 3.4603 -3.2580 17 6 0.0485 4.2470 -4.4186 18 6 1.5744 2.4924 -3.4670 19 6 2.0550 1.7921 -2.3731 20 9 3.0019 0.8414 -2.5304 21 1 -0.3634 0.4916 0.9025 22 1 -0.3634 0.5359 -0.8769 23 1 -0.3633 -1.0273 -0.0255 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5812 1.9913 1.4061 27 1 1.9358 3.1231 1.1770 28 1 1.2602 3.2634 4.7946 29 1 -0.6136 4.4463 -1.8106 30 1 -0.8172 3.7282 -4.8301 31 1 -0.2504 5.2378 -4.0766 32 1 0.8139 4.3441 -5.1887 33 1 1.9488 2.2910 -4.4597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:49 Heat of formation + Delta-G solvation = -24.174405 kcal Electronic energy + Delta-G solvation = -17089.822523 eV Core-core repulsion = 14257.404158 eV Total energy + Delta-G solvation = -2832.418366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.84711 -41.47424 -38.61401 -34.86855 -34.10318 -32.23123 -31.22153 -29.23794 -26.98847 -25.55086 -24.21121 -23.37985 -21.69046 -18.65219 -18.34139 -17.91163 -17.62909 -17.20587 -16.53004 -16.10531 -15.64893 -14.94213 -14.68445 -14.60451 -14.36709 -13.94482 -13.86282 -13.48114 -13.32883 -13.19511 -12.95495 -12.73122 -12.63926 -12.54213 -12.04396 -11.85835 -11.38511 -10.73980 -10.59362 -10.52062 -10.17041 -8.88855 -8.20323 -6.32343 -0.01422 0.18026 1.40253 1.44263 1.52032 2.38199 2.59457 2.80915 3.11801 3.27131 3.58871 3.75791 3.97990 4.03662 4.20520 4.25393 4.47773 4.53274 4.65922 4.78700 4.86333 4.92847 4.94531 5.11067 5.17186 5.27769 5.29947 5.40897 5.57460 5.71925 6.00665 6.00843 6.55743 6.77831 7.06001 7.36651 8.90513 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034490 B = 0.006840 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.624876 B = 4092.489348 C = 4434.965112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.064 3.936 3 N -0.493 5.493 4 C 0.231 3.769 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.263 3.737 14 N -0.522 5.522 15 C 0.096 3.904 16 C -0.130 4.130 17 C -0.098 4.098 18 C -0.090 4.090 19 C 0.024 3.976 20 F -0.134 7.134 21 H 0.038 0.962 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.083 0.917 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.265 0.735 29 H 0.179 0.821 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -0.886 -16.659 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.062 4.062 3 N -0.212 5.212 4 C 0.106 3.894 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.188 1.188 13 C 0.032 3.968 14 N -0.234 5.234 15 C -0.063 4.063 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.116 4.116 19 C 0.000 4.000 20 F -0.113 7.113 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.074 0.926 29 H 0.196 0.804 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.966 -0.712 -15.650 15.944 hybrid contribution 0.170 -0.343 0.527 0.651 sum -2.796 -1.055 -15.123 15.415 Atomic orbital electron populations 1.22203 0.96872 1.02654 1.00670 1.22135 0.93830 0.87074 1.03115 1.59776 1.54829 1.03993 1.02564 1.19121 0.94127 0.92075 0.84076 1.21469 1.26740 1.17107 0.92058 0.91813 1.25911 0.96106 0.95492 1.01806 1.70120 1.37996 1.26465 1.22423 0.85406 0.78820 0.78781 0.77411 1.19515 1.20685 1.18845 1.20358 0.91150 0.94557 0.90775 1.67959 1.09836 1.08853 1.36771 1.23134 0.98253 0.97182 0.87734 1.21094 0.97213 0.97811 0.97171 1.20752 1.01898 0.99168 0.93715 1.21755 0.96577 0.94577 0.98710 1.18417 0.93582 0.94014 0.94030 1.91444 1.61931 1.61780 1.96101 0.94261 0.93973 0.89593 0.89944 0.89860 0.99003 0.98915 0.92628 0.80414 0.89299 0.89862 0.89594 0.80272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.33 9.35 71.98 0.67 -5.66 16 2 C 0.06 2.65 5.73 86.30 0.49 3.14 16 3 N -0.49 -23.79 4.57 -705.87 -3.22 -27.01 16 4 C 0.23 13.21 3.73 85.56 0.32 13.53 16 5 C -0.54 -31.58 8.44 25.60 0.22 -31.36 16 6 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 9 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.26 11.20 4.56 133.06 0.61 11.81 16 14 N -0.52 -21.81 8.78 -193.02 -1.69 -23.50 16 15 C 0.10 2.90 10.84 84.62 0.92 3.81 16 16 C -0.13 -3.01 5.90 -19.76 -0.12 -3.13 16 17 C -0.10 -1.26 10.03 71.23 0.71 -0.54 16 18 C -0.09 -2.28 9.84 22.48 0.22 -2.06 16 19 C 0.02 0.83 7.07 22.59 0.16 0.99 16 20 F -0.13 -4.75 16.07 44.97 0.72 -4.03 16 21 H 0.04 1.75 6.48 -2.39 -0.02 1.73 16 22 H 0.04 1.58 7.05 -2.39 -0.02 1.56 16 23 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.08 3.01 7.03 -2.39 -0.02 2.99 16 25 H 0.08 3.61 6.73 -2.39 -0.02 3.59 16 26 H -0.01 -0.48 6.13 -2.38 -0.01 -0.49 16 27 H -0.01 -0.47 7.86 -2.39 -0.02 -0.49 16 28 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.18 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.09 0.83 8.09 -2.38 -0.02 0.82 16 33 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -72.13 279.81 3.89 -68.23 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.11 Total: 5.21 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.67 Total: -8.68 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.63 Total: -108.01 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.72 Total: -4.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.13 3.89 -68.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.060 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds