Wall clock time and date at job start Sun Mar 29 2020 22:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47006 * 2 1 4 4 C 1.46497 * 120.00010 * 269.99685 * 3 2 1 5 5 C 1.50701 * 109.47125 * 270.00165 * 4 3 2 6 6 H 1.08000 * 120.00307 * 0.02562 * 5 4 3 7 7 C 1.37887 * 120.00108 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99685 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47133 * 119.99838 * 9 7 5 12 12 H 1.48489 * 109.46936 * 239.99918 * 9 7 5 13 13 C 1.39139 * 120.00322 * 90.00092 * 3 2 1 14 14 C 1.39108 * 119.67930 * 5.24839 * 13 3 2 15 15 C 1.38307 * 119.12464 * 180.25231 * 14 13 3 16 16 C 1.50703 * 120.75775 * 179.78076 * 15 14 13 17 17 C 1.39041 * 118.48483 * 359.50512 * 15 14 13 18 18 F 1.35102 * 120.36028 * 180.23207 * 17 15 14 19 19 C 1.38217 * 119.28428 * 0.25373 * 17 15 14 20 20 N 1.31996 * 120.81596 * 359.97438 * 19 17 15 21 21 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46761 * 300.00714 * 1 2 3 23 23 H 1.08999 * 109.46561 * 59.99919 * 1 2 3 24 24 H 1.09002 * 109.47139 * 239.99889 * 2 1 3 25 25 H 1.09004 * 109.46636 * 119.99624 * 2 1 3 26 26 H 1.08999 * 109.47337 * 30.00409 * 4 3 2 27 27 H 1.09000 * 109.47250 * 150.00616 * 4 3 2 28 28 H 0.97006 * 120.00027 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.43807 * 0.03595 * 14 13 3 30 30 H 1.09002 * 109.47152 * 269.71819 * 16 15 14 31 31 H 1.09001 * 109.46980 * 149.71919 * 16 15 14 32 32 H 1.09004 * 109.47113 * 29.71900 * 16 15 14 33 33 H 1.07993 * 119.59472 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3896 -2.8780 8 7 3.3490 3.1248 -3.6186 9 14 5.9133 2.0954 -3.4175 10 1 6.6009 1.2405 -2.4168 11 1 5.9203 1.4161 -4.7380 12 1 6.6210 3.3963 -3.5262 13 6 2.2503 2.0372 1.2049 14 6 2.1219 1.3424 2.4032 15 6 2.3500 2.0071 3.5945 16 6 2.2166 1.2915 4.9141 17 6 2.7109 3.3490 3.5466 18 9 2.9473 4.0337 4.6870 19 6 2.8249 3.9750 2.3196 20 7 2.5962 3.3148 1.1997 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.5818 1.6877 -2.0284 27 1 2.0957 3.1410 -1.1384 28 1 3.6748 3.5147 -4.4449 29 1 1.8444 0.2986 2.4035 30 1 1.1933 1.3872 5.2774 31 1 2.9018 1.7330 5.6377 32 1 2.4580 0.2368 4.7816 33 1 3.1053 5.0170 2.2765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:02 Heat of formation + Delta-G solvation = -9.321866 kcal Electronic energy + Delta-G solvation = -16802.994993 eV Core-core repulsion = 13971.220682 eV Total energy + Delta-G solvation = -2831.774311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.33413 -39.71967 -36.32474 -33.54335 -32.76979 -30.66752 -29.28182 -27.53479 -26.26730 -23.62832 -22.74651 -22.02980 -19.82338 -17.06133 -16.85509 -16.51873 -16.13783 -15.34523 -14.76223 -14.49059 -14.12189 -13.51792 -13.35469 -13.13614 -12.89690 -12.76505 -12.36554 -12.28154 -12.04012 -11.73155 -11.49688 -11.16462 -10.91999 -10.64444 -10.53548 -10.11631 -9.80340 -9.13752 -8.94596 -8.77056 -8.42698 -6.77311 -6.01442 -4.08820 1.61406 1.75586 3.28557 3.36408 3.40259 3.73511 4.29151 4.44177 4.66185 4.87962 5.06578 5.23762 5.29968 5.43505 5.44081 5.59256 5.63535 5.68326 5.79274 5.93931 6.05697 6.11032 6.17525 6.26749 6.46630 6.54701 6.95988 7.14272 7.47969 7.81396 7.93512 8.23566 8.25680 8.77122 8.97731 9.55734 11.03247 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.007357 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.178330 B = 3804.831804 C = 4461.729713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.583 5.583 4 C 0.251 3.749 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.418 3.582 14 C -0.238 4.238 15 C -0.035 4.035 16 C -0.110 4.110 17 C -0.056 4.056 18 F -0.148 7.148 19 C 0.137 3.863 20 N -0.504 5.504 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -4.684 12.198 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.290 5.290 4 C 0.132 3.868 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.180 3.820 14 C -0.264 4.264 15 C -0.043 4.043 16 C -0.167 4.167 17 C -0.081 4.081 18 F -0.127 7.127 19 C -0.025 4.025 20 N -0.220 5.220 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.236 -4.283 11.001 12.542 hybrid contribution 1.013 -0.360 0.507 1.189 sum -3.222 -4.643 11.508 12.820 Atomic orbital electron populations 1.22224 0.96843 1.01312 1.02393 1.21382 0.93369 0.83134 1.02585 1.47227 1.65298 1.12148 1.04353 1.19326 0.95917 0.93883 0.77652 1.21507 0.96989 1.31631 1.06143 0.92595 1.24915 0.97687 0.95007 0.96400 1.69941 1.35498 1.33632 1.14295 0.86487 0.84838 0.78037 0.78323 1.19902 1.21003 1.20892 1.18472 0.88891 0.88169 0.86429 1.21181 1.13279 1.01253 0.90658 1.19947 0.95999 0.92210 0.96190 1.20687 1.02583 1.00064 0.93377 1.18215 1.15075 0.91642 0.83145 1.91385 1.93337 1.79408 1.48614 1.22523 0.94447 0.99872 0.85645 1.67444 1.17968 1.07882 1.28724 0.92204 0.92951 0.92112 0.89853 0.91674 0.95364 0.93127 0.92818 0.84873 0.90763 0.91165 0.91060 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.12 1.97 5.98 -4.04 -0.02 1.94 16 3 N -0.58 -12.27 2.58 -175.18 -0.45 -12.72 16 4 C 0.25 6.42 5.22 -5.19 -0.03 6.39 16 5 C -0.52 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.42 8.52 7.37 -154.93 -1.14 7.38 16 14 C -0.24 -3.97 8.97 -39.23 -0.35 -4.33 16 15 C -0.04 -0.55 5.92 -104.30 -0.62 -1.17 16 16 C -0.11 -1.27 9.90 36.01 0.36 -0.92 16 17 C -0.06 -0.93 7.28 -39.29 -0.29 -1.22 16 18 F -0.15 -2.36 16.61 2.25 0.04 -2.32 16 19 C 0.14 2.50 11.16 -17.49 -0.20 2.31 16 20 N -0.50 -10.91 9.08 -12.37 -0.11 -11.03 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.41 8.07 -51.93 -0.42 1.00 16 25 H 0.07 0.92 5.97 -51.93 -0.31 0.61 16 26 H 0.03 0.74 8.07 -51.93 -0.42 0.33 16 27 H 0.05 1.43 7.30 -51.93 -0.38 1.05 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.13 1.89 6.02 -52.48 -0.32 1.57 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.16 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -30.54 287.30 -7.13 -37.68 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.32 Total: -2.27 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.33 Total: -4.86 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.17 Total: -49.26 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.54 -7.13 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.354 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds