Wall clock time and date at job start Sun Mar 29 2020 22:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47006 * 2 1 4 4 C 1.46497 * 120.00010 * 269.99685 * 3 2 1 5 5 C 1.50701 * 109.47125 * 270.00165 * 4 3 2 6 6 H 1.08000 * 120.00307 * 0.02562 * 5 4 3 7 7 C 1.37887 * 120.00108 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99685 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00134 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46887 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47133 * 119.99838 * 9 7 5 12 12 H 1.48489 * 109.46936 * 239.99918 * 9 7 5 13 13 C 1.39139 * 120.00322 * 90.00092 * 3 2 1 14 14 C 1.39108 * 119.67930 * 5.24839 * 13 3 2 15 15 C 1.38307 * 119.12464 * 180.25231 * 14 13 3 16 16 C 1.50703 * 120.75775 * 179.78076 * 15 14 13 17 17 C 1.39041 * 118.48483 * 359.50512 * 15 14 13 18 18 F 1.35102 * 120.36028 * 180.23207 * 17 15 14 19 19 C 1.38217 * 119.28428 * 0.25373 * 17 15 14 20 20 N 1.31996 * 120.81596 * 359.97438 * 19 17 15 21 21 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46761 * 300.00714 * 1 2 3 23 23 H 1.08999 * 109.46561 * 59.99919 * 1 2 3 24 24 H 1.09002 * 109.47139 * 239.99889 * 2 1 3 25 25 H 1.09004 * 109.46636 * 119.99624 * 2 1 3 26 26 H 1.08999 * 109.47337 * 30.00409 * 4 3 2 27 27 H 1.09000 * 109.47250 * 150.00616 * 4 3 2 28 28 H 0.97006 * 120.00027 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.43807 * 0.03595 * 14 13 3 30 30 H 1.09002 * 109.47152 * 269.71819 * 16 15 14 31 31 H 1.09001 * 109.46980 * 149.71919 * 16 15 14 32 32 H 1.09004 * 109.47113 * 29.71900 * 16 15 14 33 33 H 1.07993 * 119.59472 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3896 -2.8780 8 7 3.3490 3.1248 -3.6186 9 14 5.9133 2.0954 -3.4175 10 1 6.6009 1.2405 -2.4168 11 1 5.9203 1.4161 -4.7380 12 1 6.6210 3.3963 -3.5262 13 6 2.2503 2.0372 1.2049 14 6 2.1219 1.3424 2.4032 15 6 2.3500 2.0071 3.5945 16 6 2.2166 1.2915 4.9141 17 6 2.7109 3.3490 3.5466 18 9 2.9473 4.0337 4.6870 19 6 2.8249 3.9750 2.3196 20 7 2.5962 3.3148 1.1997 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.5818 1.6877 -2.0284 27 1 2.0957 3.1410 -1.1384 28 1 3.6748 3.5147 -4.4449 29 1 1.8444 0.2986 2.4035 30 1 1.1933 1.3872 5.2774 31 1 2.9018 1.7330 5.6377 32 1 2.4580 0.2368 4.7816 33 1 3.1053 5.0170 2.2765 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:02 Heat of formation + Delta-G solvation = -26.329209 kcal Electronic energy + Delta-G solvation = -16803.732487 eV Core-core repulsion = 13971.220682 eV Total energy + Delta-G solvation = -2832.511805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.65636 -41.14323 -37.83277 -34.93152 -34.72534 -32.00052 -30.96680 -28.71622 -28.02658 -25.12049 -24.47597 -23.33499 -21.29193 -18.66083 -18.37942 -18.18835 -17.72550 -16.68656 -16.58353 -15.81838 -15.71435 -15.05082 -14.66439 -14.32918 -14.20778 -14.09457 -13.81174 -13.58961 -13.41774 -13.20654 -13.03469 -12.68492 -12.66985 -12.41196 -12.17572 -11.80213 -11.72265 -10.62314 -10.59553 -10.37598 -10.20979 -8.45373 -8.02518 -6.32237 0.26316 0.38561 1.36087 1.38028 1.49504 2.23146 2.42375 2.88428 3.10696 3.33558 3.64297 3.78550 4.03205 4.11867 4.26527 4.41854 4.54451 4.59721 4.75312 4.78677 4.86099 4.90872 5.02692 5.11308 5.16449 5.25826 5.30777 5.39921 5.66755 5.81727 6.09844 6.26056 6.58064 6.82123 7.32311 7.41015 8.87906 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.007357 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.178330 B = 3804.831804 C = 4461.729713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.598 5.598 4 C 0.273 3.727 5 C -0.534 4.534 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.391 3.609 14 C -0.227 4.227 15 C -0.030 4.030 16 C -0.108 4.108 17 C -0.051 4.051 18 F -0.141 7.141 19 C 0.120 3.880 20 N -0.555 5.555 21 H 0.094 0.906 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.010 0.990 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.164 0.836 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 -6.431 14.196 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.307 5.307 4 C 0.151 3.849 5 C -0.573 4.573 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.207 1.207 13 C 0.155 3.845 14 C -0.252 4.252 15 C -0.038 4.038 16 C -0.164 4.164 17 C -0.076 4.076 18 F -0.120 7.120 19 C -0.040 4.040 20 N -0.272 5.272 21 H 0.113 0.887 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.028 0.972 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.181 0.819 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.906 -6.035 13.050 14.899 hybrid contribution 0.880 0.227 0.009 0.909 sum -3.026 -5.808 13.059 14.609 Atomic orbital electron populations 1.22136 0.94952 1.03225 1.01379 1.21631 0.94878 0.80901 1.03386 1.47104 1.66873 1.13629 1.03096 1.18678 0.94445 0.92150 0.79607 1.21743 0.97986 1.31343 1.06188 0.93440 1.25766 1.01887 0.94701 0.96501 1.70055 1.37464 1.34533 1.14783 0.85452 0.79649 0.77945 0.78249 1.19486 1.19724 1.20691 1.18846 0.90013 0.88330 0.87282 1.21405 1.12043 1.02373 0.89357 1.20427 0.93925 0.91658 0.97799 1.20814 1.03981 1.00851 0.90778 1.18287 1.14204 0.92343 0.82784 1.91405 1.93208 1.79415 1.48010 1.22748 0.94933 1.00595 0.85759 1.67346 1.19761 1.09355 1.30737 0.88699 0.92648 0.94409 0.91073 0.88737 0.97200 0.96866 0.92553 0.81858 0.88764 0.90638 0.88780 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.46 16 2 C 0.11 3.65 5.98 86.38 0.52 4.17 16 3 N -0.60 -25.56 2.58 -708.15 -1.82 -27.38 16 4 C 0.27 14.60 5.22 85.63 0.45 15.05 16 5 C -0.53 -30.59 9.39 25.60 0.24 -30.35 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.58 5.46 84.66 0.46 1.05 16 8 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 C 0.39 15.96 7.37 133.02 0.98 16.94 16 14 C -0.23 -7.03 8.97 22.50 0.20 -6.83 16 15 C -0.03 -0.84 5.92 -19.65 -0.12 -0.96 16 16 C -0.11 -2.01 9.90 71.24 0.71 -1.30 16 17 C -0.05 -1.64 7.28 22.46 0.16 -1.47 16 18 F -0.14 -4.20 16.61 44.97 0.75 -3.46 16 19 C 0.12 4.40 11.16 84.66 0.94 5.35 16 20 N -0.55 -24.69 9.08 -193.04 -1.75 -26.44 16 21 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 25 H 0.09 2.41 5.97 -2.38 -0.01 2.40 16 26 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 27 H 0.01 0.80 7.30 -2.39 -0.02 0.78 16 28 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 29 H 0.16 3.96 6.02 -2.91 -0.02 3.95 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.37 7.73 -2.39 -0.02 1.35 16 32 H 0.09 1.37 8.10 -2.38 -0.02 1.35 16 33 H 0.17 5.41 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -68.09 287.30 5.87 -62.23 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.10 Total: 5.50 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.28 Total: -1.83 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.29 Total: -109.52 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.75 Total: -3.46 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.09 5.87 -62.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.897 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds