Wall clock time and date at job start Sun Mar 29 2020 21:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47003 * 2 1 4 4 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46628 * 179.97438 * 4 3 2 6 6 C 1.36910 * 120.00420 * 269.99803 * 5 4 3 7 7 H 1.07999 * 120.00177 * 145.31037 * 6 5 4 8 8 C 1.38818 * 119.99629 * 325.31055 * 6 5 4 9 9 N 1.31566 * 120.00508 * 337.76166 * 8 6 5 10 10 Si 1.86802 * 119.99774 * 157.76527 * 8 6 5 11 11 H 1.48500 * 109.47249 * 59.99799 * 10 8 6 12 12 H 1.48495 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47190 * 299.99872 * 10 8 6 14 14 C 1.38853 * 119.99749 * 90.00407 * 5 4 3 15 15 C 1.39113 * 119.69786 * 172.03514 * 14 5 4 16 16 C 1.38597 * 119.05961 * 180.24950 * 15 14 5 17 17 F 1.35105 * 120.77693 * 179.69506 * 16 15 14 18 18 C 1.39170 * 118.45244 * 359.46619 * 16 15 14 19 19 C 1.38017 * 119.30351 * 0.53334 * 18 16 15 20 20 N 1.31941 * 120.89072 * 359.73126 * 19 18 16 21 21 H 1.08994 * 109.47406 * 60.00228 * 1 2 3 22 22 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47275 * 300.00081 * 1 2 3 24 24 H 1.09004 * 109.47275 * 239.99919 * 2 1 3 25 25 H 1.09004 * 109.47333 * 119.99677 * 2 1 3 26 26 H 1.08997 * 109.47301 * 60.00229 * 3 2 1 27 27 H 1.08994 * 109.46853 * 300.00110 * 3 2 1 28 28 H 1.08997 * 109.47064 * 59.99963 * 4 3 2 29 29 H 1.08994 * 109.47366 * 299.99674 * 4 3 2 30 30 H 0.96995 * 120.00206 * 175.60384 * 9 8 6 31 31 H 1.08002 * 120.46904 * 359.97438 * 15 14 5 32 32 H 1.07998 * 120.34363 * 180.26567 * 18 16 15 33 33 H 1.07996 * 119.55359 * 179.74397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4689 -1.1872 7 1 4.0960 4.5288 -1.2705 8 6 4.7610 2.7606 -2.2825 9 7 5.3971 1.6227 -2.1046 10 14 4.4971 3.4231 -4.0090 11 1 5.1455 4.7533 -4.1333 12 1 5.0951 2.4875 -4.9950 13 1 3.0414 3.5556 -4.2713 14 6 4.2902 3.4786 1.2010 15 6 4.9083 4.7249 1.1989 16 6 5.1381 5.3644 2.4068 17 9 5.7413 6.5726 2.4456 18 6 4.7286 4.7351 3.5787 19 6 4.1210 3.4981 3.5043 20 7 3.9202 2.9109 2.3399 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.9329 0.9288 -0.8908 29 1 3.9337 0.9286 0.8891 30 1 5.6728 1.0963 -2.8712 31 1 5.2089 5.1855 0.2694 32 1 4.8886 5.2078 4.5364 33 1 3.8053 3.0043 4.4114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:45 Heat of formation + Delta-G solvation = -15.919289 kcal Electronic energy + Delta-G solvation = -16868.431688 eV Core-core repulsion = 14036.371291 eV Total energy + Delta-G solvation = -2832.060397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.24591 -39.08419 -36.44145 -34.12154 -32.13269 -30.82913 -29.48945 -27.85904 -25.06888 -23.10112 -22.36576 -20.91496 -20.23516 -17.88440 -16.76077 -15.94278 -15.31972 -14.96865 -14.80152 -14.73535 -14.13835 -13.78943 -13.64939 -13.18552 -12.79313 -12.67655 -12.24002 -12.06039 -11.58966 -11.40487 -11.18190 -10.76483 -10.64692 -10.44792 -10.42865 -10.29040 -9.81270 -9.41221 -8.67345 -8.53793 -8.51973 -6.99215 -6.41689 -4.08328 2.15117 2.26072 3.09286 3.13141 3.15470 3.92382 4.52698 4.61427 4.97436 5.06784 5.37570 5.46563 5.54796 5.64114 5.89670 6.04722 6.18287 6.22297 6.23111 6.35954 6.40721 6.52869 6.68032 6.70274 6.78691 6.83030 6.97364 7.03516 7.23149 7.38190 7.59232 7.96600 8.40341 8.89935 9.10641 9.63809 10.44493 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.010119 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.868606 B = 2766.303940 C = 4167.172662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.117 3.883 5 N -0.407 5.407 6 C -0.316 4.316 7 H 0.092 0.908 8 C 0.041 3.959 9 N -0.850 5.850 10 Si 0.920 3.080 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.391 3.609 15 C -0.280 4.280 16 C 0.171 3.829 17 F -0.148 7.148 18 C -0.335 4.335 19 C 0.178 3.822 20 N -0.570 5.570 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.273 0.727 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -0.518 3.514 5.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.006 4.006 5 N -0.094 5.094 6 C -0.444 4.444 7 H 0.110 0.890 8 C -0.167 4.167 9 N -0.484 5.484 10 Si 0.746 3.254 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.150 3.850 15 C -0.307 4.307 16 C 0.145 3.855 17 F -0.127 7.127 18 C -0.363 4.363 19 C 0.015 3.985 20 N -0.291 5.291 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.792 -1.587 2.974 5.859 hybrid contribution 0.480 1.382 -0.739 1.639 sum -4.312 -0.205 2.235 4.862 Atomic orbital electron populations 1.21752 0.96646 1.00653 1.01484 1.21422 0.94978 0.97722 1.01553 1.21898 0.97639 0.95454 1.01494 1.21571 0.91532 0.83738 1.03791 1.42497 1.54561 1.11654 1.00697 1.19449 1.42972 0.95770 0.86243 0.89007 1.25397 0.93758 0.96869 1.00652 1.70018 1.31569 1.14609 1.32210 0.86097 0.79073 0.79061 0.81212 1.19482 1.20655 1.19590 1.18457 0.90420 0.89547 0.86541 1.21131 1.12681 0.99550 0.97370 1.17669 0.93093 0.80188 0.94596 1.91416 1.81098 1.42728 1.97450 1.21235 1.16919 1.01215 0.96882 1.21933 0.91531 0.90333 0.94697 1.67217 1.27260 1.37246 0.97408 0.93095 0.93440 0.93059 0.92378 0.92326 0.92564 0.92503 0.87602 0.92351 0.91692 0.84651 0.86242 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.15 0.37 -1.66 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.12 2.67 4.96 -4.04 -0.02 2.65 16 5 N -0.41 -10.05 2.64 -115.07 -0.30 -10.36 16 6 C -0.32 -7.98 8.38 -15.07 -0.13 -8.11 16 7 H 0.09 2.28 7.03 -52.49 -0.37 1.92 16 8 C 0.04 1.00 4.96 -17.45 -0.09 0.91 16 9 N -0.85 -21.81 11.31 55.49 0.63 -21.18 16 10 Si 0.92 19.15 29.61 -169.99 -5.03 14.12 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 C 0.39 9.36 7.31 -155.06 -1.13 8.22 16 15 C -0.28 -6.44 9.25 -39.12 -0.36 -6.80 16 16 C 0.17 3.56 7.39 -39.10 -0.29 3.27 16 17 F -0.15 -2.94 17.30 2.25 0.04 -2.90 16 18 C -0.34 -6.27 10.10 -39.32 -0.40 -6.67 16 19 C 0.18 3.35 11.17 -17.59 -0.20 3.15 16 20 N -0.57 -12.59 9.21 -12.46 -0.11 -12.70 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.11 2.58 5.33 -51.93 -0.28 2.30 16 29 H 0.06 1.34 7.51 -51.93 -0.39 0.95 16 30 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 31 H 0.14 3.16 6.59 -52.49 -0.35 2.82 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -26.35 284.19 -7.37 -33.72 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.32 Total: 4.74 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.55 Total: -9.72 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.21 Total: -44.23 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.35 -7.37 -33.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.800 kcal (2) G-P(sol) polarization free energy of solvation -26.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds