Wall clock time and date at job start Sun Mar 29 2020 21:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47003 * 2 1 4 4 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46628 * 179.97438 * 4 3 2 6 6 C 1.36910 * 120.00420 * 269.99803 * 5 4 3 7 7 H 1.07999 * 120.00177 * 145.31037 * 6 5 4 8 8 C 1.38818 * 119.99629 * 325.31055 * 6 5 4 9 9 N 1.31566 * 120.00508 * 337.76166 * 8 6 5 10 10 Si 1.86802 * 119.99774 * 157.76527 * 8 6 5 11 11 H 1.48500 * 109.47249 * 59.99799 * 10 8 6 12 12 H 1.48495 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47190 * 299.99872 * 10 8 6 14 14 C 1.38853 * 119.99749 * 90.00407 * 5 4 3 15 15 C 1.39113 * 119.69786 * 172.03514 * 14 5 4 16 16 C 1.38597 * 119.05961 * 180.24950 * 15 14 5 17 17 F 1.35105 * 120.77693 * 179.69506 * 16 15 14 18 18 C 1.39170 * 118.45244 * 359.46619 * 16 15 14 19 19 C 1.38017 * 119.30351 * 0.53334 * 18 16 15 20 20 N 1.31941 * 120.89072 * 359.73126 * 19 18 16 21 21 H 1.08994 * 109.47406 * 60.00228 * 1 2 3 22 22 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47275 * 300.00081 * 1 2 3 24 24 H 1.09004 * 109.47275 * 239.99919 * 2 1 3 25 25 H 1.09004 * 109.47333 * 119.99677 * 2 1 3 26 26 H 1.08997 * 109.47301 * 60.00229 * 3 2 1 27 27 H 1.08994 * 109.46853 * 300.00110 * 3 2 1 28 28 H 1.08997 * 109.47064 * 59.99963 * 4 3 2 29 29 H 1.08994 * 109.47366 * 299.99674 * 4 3 2 30 30 H 0.96995 * 120.00206 * 175.60384 * 9 8 6 31 31 H 1.08002 * 120.46904 * 359.97438 * 15 14 5 32 32 H 1.07998 * 120.34363 * 180.26567 * 18 16 15 33 33 H 1.07996 * 119.55359 * 179.74397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4689 -1.1872 7 1 4.0960 4.5288 -1.2705 8 6 4.7610 2.7606 -2.2825 9 7 5.3971 1.6227 -2.1046 10 14 4.4971 3.4231 -4.0090 11 1 5.1455 4.7533 -4.1333 12 1 5.0951 2.4875 -4.9950 13 1 3.0414 3.5556 -4.2713 14 6 4.2902 3.4786 1.2010 15 6 4.9083 4.7249 1.1989 16 6 5.1381 5.3644 2.4068 17 9 5.7413 6.5726 2.4456 18 6 4.7286 4.7351 3.5787 19 6 4.1210 3.4981 3.5043 20 7 3.9202 2.9109 2.3399 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.9329 0.9288 -0.8908 29 1 3.9337 0.9286 0.8891 30 1 5.6728 1.0963 -2.8712 31 1 5.2089 5.1855 0.2694 32 1 4.8886 5.2078 4.5364 33 1 3.8053 3.0043 4.4114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:44 Heat of formation + Delta-G solvation = -28.102468 kcal Electronic energy + Delta-G solvation = -16868.959991 eV Core-core repulsion = 14036.371291 eV Total energy + Delta-G solvation = -2832.588699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.88469 -40.78824 -38.13595 -35.58951 -33.93882 -32.51815 -31.07223 -29.46996 -26.82566 -24.67115 -24.00835 -22.48627 -21.81047 -19.62908 -18.51801 -17.65442 -17.05683 -16.61361 -16.44024 -16.29039 -15.71644 -15.45088 -15.22396 -14.74357 -14.36437 -14.20937 -13.74875 -13.63385 -13.15141 -13.06391 -12.83560 -12.35391 -12.19351 -12.02665 -11.90554 -11.78401 -11.41346 -11.14357 -10.40644 -10.25630 -10.22127 -8.79520 -8.23139 -5.99248 0.46889 0.61758 1.40991 1.44548 1.51501 2.20780 2.77222 2.87117 3.23623 3.39958 3.88089 4.13697 4.20581 4.34466 4.36093 4.47963 4.57805 4.66396 4.90667 4.93325 5.03041 5.08704 5.12347 5.16861 5.21989 5.30582 5.33265 5.41793 5.47077 5.62789 5.91519 6.15825 6.60126 7.16021 7.29327 7.84953 8.60794 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.010119 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.868606 B = 2766.303940 C = 4167.172662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.124 3.876 5 N -0.431 5.431 6 C -0.334 4.334 7 H 0.083 0.917 8 C 0.003 3.997 9 N -0.882 5.882 10 Si 0.982 3.018 11 H -0.268 1.268 12 H -0.276 1.276 13 H -0.266 1.266 14 C 0.375 3.625 15 C -0.310 4.310 16 C 0.169 3.831 17 F -0.143 7.143 18 C -0.315 4.315 19 C 0.179 3.821 20 N -0.583 5.583 21 H 0.049 0.951 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.275 0.725 31 H 0.118 0.882 32 H 0.160 0.840 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -0.477 4.950 7.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.151 4.151 4 C 0.001 3.999 5 N -0.120 5.120 6 C -0.463 4.463 7 H 0.101 0.899 8 C -0.201 4.201 9 N -0.518 5.518 10 Si 0.805 3.195 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.191 1.191 14 C 0.136 3.864 15 C -0.338 4.338 16 C 0.142 3.858 17 F -0.121 7.121 18 C -0.341 4.341 19 C 0.017 3.983 20 N -0.304 5.304 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.177 0.823 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.665 -1.528 4.447 7.362 hybrid contribution 0.803 1.453 -0.935 1.905 sum -4.862 -0.075 3.513 5.998 Atomic orbital electron populations 1.21707 0.94394 1.02250 1.01647 1.21396 0.96896 0.95145 1.01783 1.21754 0.95476 0.97616 1.00237 1.21476 0.93321 0.82972 1.02160 1.42637 1.56304 1.12241 1.00859 1.19558 1.43695 0.95748 0.87292 0.89894 1.26147 0.93208 0.97062 1.03698 1.70100 1.32756 1.15813 1.33112 0.85161 0.79035 0.78385 0.76922 1.19311 1.20131 1.19080 1.18727 0.90691 0.89793 0.87153 1.21121 1.14615 1.00182 0.97906 1.17851 0.92865 0.80346 0.94712 1.91429 1.80933 1.42361 1.97418 1.21705 1.14193 1.00658 0.97523 1.22793 0.90060 0.90398 0.95065 1.67295 1.27453 1.37824 0.97857 0.93160 0.91119 0.92701 0.92550 0.91708 0.93330 0.93997 0.89531 0.93350 0.91558 0.86363 0.82284 0.79040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.11 -3.60 5.93 30.59 0.18 -3.41 16 3 C -0.11 -4.45 5.54 30.60 0.17 -4.28 16 4 C 0.12 5.82 4.96 86.38 0.43 6.25 16 5 N -0.43 -22.01 2.64 -517.96 -1.37 -23.38 16 6 C -0.33 -17.59 8.38 84.04 0.70 -16.88 16 7 H 0.08 4.35 7.03 -2.91 -0.02 4.33 16 8 C 0.00 0.14 4.96 84.87 0.42 0.56 16 9 N -0.88 -46.72 11.31 21.65 0.24 -46.48 16 10 Si 0.98 40.09 29.61 68.60 2.03 42.12 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 14 C 0.38 18.24 7.31 133.07 0.97 19.21 16 15 C -0.31 -14.53 9.25 22.57 0.21 -14.33 16 16 C 0.17 6.80 7.39 22.58 0.17 6.97 16 17 F -0.14 -5.45 17.30 44.97 0.78 -4.68 16 18 C -0.31 -10.63 10.10 22.44 0.23 -10.41 16 19 C 0.18 6.12 11.17 84.62 0.95 7.07 16 20 N -0.58 -25.12 9.21 -193.34 -1.78 -26.90 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 4.39 5.33 -2.39 -0.01 4.38 16 29 H 0.05 2.28 7.51 -2.39 -0.02 2.27 16 30 H 0.27 13.62 8.32 -92.71 -0.77 12.85 16 31 H 0.12 5.82 6.59 -2.91 -0.02 5.80 16 32 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.19 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -57.97 284.19 6.14 -51.83 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.10 Total: 19.67 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.14 Total: -12.18 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -2.90 Total: -96.76 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -57.97 6.14 -51.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.725 kcal (2) G-P(sol) polarization free energy of solvation -57.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds