Wall clock time and date at job start Sun Mar 29 2020 22:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47335 * 239.99997 * 3 2 1 5 5 H 1.48493 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46753 * 120.00097 * 3 2 1 7 7 C 1.38820 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99860 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47339 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46973 * 180.02562 * 12 11 10 14 14 C 1.34787 * 119.99791 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99739 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00026 * 179.97438 * 14 13 12 17 17 H 1.08996 * 115.56432 * 325.69556 * 16 14 13 18 18 C 1.53004 * 117.49684 * 111.38577 * 16 14 13 19 19 C 1.52989 * 59.99817 * 107.49073 * 18 16 14 20 20 C 1.52993 * 138.58986 * 130.89726 * 19 18 16 21 21 C 1.53002 * 60.03097 * 130.87830 * 20 19 18 22 22 H 0.96997 * 120.00268 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00351 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.46693 * 60.00362 * 10 9 7 25 25 H 1.08993 * 109.47439 * 300.00401 * 10 9 7 26 26 H 1.09004 * 109.46969 * 60.00143 * 11 10 9 27 27 H 1.09005 * 109.47129 * 300.00902 * 11 10 9 28 28 H 1.08997 * 109.46845 * 60.00197 * 12 11 10 29 29 H 1.09002 * 109.47147 * 300.00088 * 12 11 10 30 30 H 0.96995 * 120.00608 * 0.02562 * 13 12 11 31 31 H 1.08998 * 117.50021 * 359.97438 * 18 16 14 32 32 H 1.09005 * 117.51427 * 214.97253 * 18 16 14 33 33 H 1.09002 * 117.49972 * 238.37931 * 20 19 18 34 34 H 1.09002 * 117.49720 * 23.37816 * 20 19 18 35 35 H 1.09000 * 117.49996 * 107.50719 * 21 20 19 36 36 H 1.09007 * 117.49696 * 252.52389 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 6 1.8288 -6.1448 -0.0026 13 7 0.8768 -7.2582 -0.0036 14 6 1.3260 -8.5290 -0.0047 15 8 2.5184 -8.7506 -0.0045 16 6 0.3468 -9.6744 -0.0052 17 1 -0.5760 -9.5045 0.5495 18 6 0.2633 -10.5320 -1.2695 19 6 0.9191 -11.0932 -0.0064 20 6 0.8568 -12.3564 0.8545 21 6 2.2103 -11.8109 0.3948 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6853 -3.7149 0.8878 25 1 2.6841 -3.7142 -0.8921 26 1 0.4369 -4.7614 -0.8918 27 1 0.4374 -4.7625 0.8882 28 1 2.4554 -6.2028 0.8873 29 1 2.4554 -6.2022 -0.8926 30 1 -0.0769 -7.0810 -0.0042 31 1 0.9164 -10.2675 -2.1011 32 1 -0.7143 -10.9265 -1.5468 33 1 0.5966 -12.2364 1.9062 34 1 0.4957 -13.2700 0.3822 35 1 2.8407 -11.3320 1.1441 36 1 2.7395 -12.3654 -0.3802 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167303401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:22 Heat of formation + Delta-G solvation = 24.050555 kcal Electronic energy + Delta-G solvation = -15875.153339 eV Core-core repulsion = 13168.286470 eV Total energy + Delta-G solvation = -2706.866869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05287 -37.77606 -35.92948 -34.30659 -32.91426 -31.87686 -29.56684 -25.81279 -23.87316 -22.62872 -22.31432 -21.20732 -20.47952 -19.25095 -17.30845 -16.84062 -16.04503 -15.64416 -15.24036 -15.01929 -14.65915 -14.23303 -14.05328 -13.26661 -13.05474 -12.69150 -12.47511 -11.91179 -11.71549 -11.64689 -10.95450 -10.90929 -10.79709 -10.61067 -10.47200 -10.36937 -10.25441 -10.11727 -9.79748 -9.65725 -9.02907 -8.87624 -6.93869 -5.77283 -3.06254 2.42153 2.97827 3.44741 3.47698 3.48644 3.49982 3.61473 4.03349 4.51200 4.57247 4.59540 4.86888 5.11322 5.19663 5.30119 5.32336 5.36145 5.39723 5.41840 5.57361 5.63405 5.68304 5.70099 5.93816 5.99939 6.06802 6.19492 6.32040 6.47916 6.78943 6.83208 7.50395 7.69564 8.21964 8.41768 9.52732 10.09848 10.44661 11.45742 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082011 B = 0.003104 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.337482 B = 9019.027179 C = 9205.405776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.123 3.877 13 N -0.724 5.724 14 C 0.537 3.463 15 O -0.537 6.537 16 C -0.142 4.142 17 H 0.124 0.876 18 C -0.100 4.100 19 C -0.203 4.203 20 C -0.130 4.130 21 C -0.113 4.113 22 H 0.256 0.744 23 H 0.384 0.616 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.401 0.599 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -23.231 -0.193 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.376 5.376 14 C 0.323 3.677 15 O -0.414 6.414 16 C -0.163 4.163 17 H 0.142 0.858 18 C -0.138 4.138 19 C -0.203 4.203 20 C -0.167 4.167 21 C -0.150 4.150 22 H 0.066 0.934 23 H 0.217 0.783 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.781 -23.233 -0.189 23.247 hybrid contribution -0.441 1.202 0.044 1.281 sum -1.222 -22.031 -0.145 22.065 Atomic orbital electron populations 1.69648 1.05146 1.25818 1.57777 1.24757 0.95561 0.97765 1.02974 0.86232 0.78502 0.83360 0.77902 1.21214 1.21658 1.21221 1.19207 0.91084 0.84137 1.42772 0.91140 1.42333 1.05865 0.99988 1.89631 1.20519 0.93277 0.85192 0.98200 1.21944 0.99572 0.93315 1.02732 1.21358 0.91749 0.84583 1.02398 1.46026 1.10774 1.05579 1.75174 1.19668 0.88750 0.83203 0.76081 1.90694 1.16623 1.84755 1.49319 1.21987 1.00300 0.89510 1.04474 0.85815 1.22661 1.01799 0.99130 0.90174 1.21159 1.04838 0.92568 1.01751 1.22766 1.00719 0.94323 0.98914 1.22611 0.89659 1.00264 1.02488 0.93442 0.78296 0.96057 0.96063 0.91268 0.91295 0.91406 0.91412 0.76462 0.88034 0.87569 0.88540 0.88369 0.88156 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.88 5.60 -59.91 -0.34 -19.21 16 10 C 0.16 3.16 6.26 -4.04 -0.03 3.14 16 11 C -0.14 -2.13 5.44 -26.73 -0.15 -2.28 16 12 C 0.12 1.72 5.67 -4.04 -0.02 1.70 16 13 N -0.72 -8.67 5.56 -60.30 -0.33 -9.00 16 14 C 0.54 7.06 7.61 -10.98 -0.08 6.98 16 15 O -0.54 -9.09 16.25 5.56 0.09 -9.00 16 16 C -0.14 -1.40 6.19 -91.77 -0.57 -1.96 16 17 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.10 -0.86 10.23 -26.73 -0.27 -1.13 16 19 C -0.20 -1.99 5.06 -154.49 -0.78 -2.77 16 20 C -0.13 -1.01 10.53 -26.73 -0.28 -1.29 16 21 C -0.11 -1.09 10.17 -26.69 -0.27 -1.36 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.38 10.23 7.67 -40.82 -0.31 9.91 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -33.37 312.12 -8.58 -41.95 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.70 Total: 7.28 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.70 Total: -6.53 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.05 Total: -55.97 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.37 -8.58 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167303401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.000 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds