Wall clock time and date at job start Sun Mar 29 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47335 * 239.99997 * 3 2 1 5 5 H 1.48493 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46753 * 120.00097 * 3 2 1 7 7 C 1.38820 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99860 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47250 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47339 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46973 * 180.02562 * 12 11 10 14 14 C 1.34787 * 119.99791 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99739 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00026 * 179.97438 * 14 13 12 17 17 H 1.08996 * 115.56432 * 325.69556 * 16 14 13 18 18 C 1.53004 * 117.49684 * 111.38577 * 16 14 13 19 19 C 1.52989 * 59.99817 * 107.49073 * 18 16 14 20 20 C 1.52993 * 138.58986 * 130.89726 * 19 18 16 21 21 C 1.53002 * 60.03097 * 130.87830 * 20 19 18 22 22 H 0.96997 * 120.00268 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00351 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.46693 * 60.00362 * 10 9 7 25 25 H 1.08993 * 109.47439 * 300.00401 * 10 9 7 26 26 H 1.09004 * 109.46969 * 60.00143 * 11 10 9 27 27 H 1.09005 * 109.47129 * 300.00902 * 11 10 9 28 28 H 1.08997 * 109.46845 * 60.00197 * 12 11 10 29 29 H 1.09002 * 109.47147 * 300.00088 * 12 11 10 30 30 H 0.96995 * 120.00608 * 0.02562 * 13 12 11 31 31 H 1.08998 * 117.50021 * 359.97438 * 18 16 14 32 32 H 1.09005 * 117.51427 * 214.97253 * 18 16 14 33 33 H 1.09002 * 117.49972 * 238.37931 * 20 19 18 34 34 H 1.09002 * 117.49720 * 23.37816 * 20 19 18 35 35 H 1.09000 * 117.49996 * 107.50719 * 21 20 19 36 36 H 1.09007 * 117.49696 * 252.52389 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 6 1.8288 -6.1448 -0.0026 13 7 0.8768 -7.2582 -0.0036 14 6 1.3260 -8.5290 -0.0047 15 8 2.5184 -8.7506 -0.0045 16 6 0.3468 -9.6744 -0.0052 17 1 -0.5760 -9.5045 0.5495 18 6 0.2633 -10.5320 -1.2695 19 6 0.9191 -11.0932 -0.0064 20 6 0.8568 -12.3564 0.8545 21 6 2.2103 -11.8109 0.3948 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6853 -3.7149 0.8878 25 1 2.6841 -3.7142 -0.8921 26 1 0.4369 -4.7614 -0.8918 27 1 0.4374 -4.7625 0.8882 28 1 2.4554 -6.2028 0.8873 29 1 2.4554 -6.2022 -0.8926 30 1 -0.0769 -7.0810 -0.0042 31 1 0.9164 -10.2675 -2.1011 32 1 -0.7143 -10.9265 -1.5468 33 1 0.5966 -12.2364 1.9062 34 1 0.4957 -13.2700 0.3822 35 1 2.8407 -11.3320 1.1441 36 1 2.7395 -12.3654 -0.3802 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167303401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:21 Heat of formation + Delta-G solvation = 1.479187 kcal Electronic energy + Delta-G solvation = -15876.132107 eV Core-core repulsion = 13168.286470 eV Total energy + Delta-G solvation = -2707.845637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02622 -38.60911 -37.41948 -35.88101 -33.90913 -33.41398 -31.25864 -27.34193 -25.31686 -23.76547 -23.27670 -22.60036 -21.44174 -20.10510 -19.15534 -18.02437 -17.18319 -16.82745 -16.51707 -15.92352 -15.84802 -15.47609 -15.30906 -15.20530 -14.72077 -13.91256 -13.49309 -13.31528 -12.80422 -12.64817 -12.62685 -12.45497 -12.35971 -12.11421 -12.06577 -11.80965 -11.19147 -11.09599 -10.95120 -10.93807 -10.75183 -10.12446 -9.03786 -7.97726 -5.27235 1.45637 1.47079 1.50287 1.56492 2.03905 2.55290 2.74283 2.87407 3.33721 3.35894 3.74341 3.78480 3.85993 4.05533 4.11313 4.26667 4.41855 4.50950 4.62209 4.70362 4.70913 4.75478 4.77903 4.82059 4.86011 5.01850 5.04220 5.26000 5.27362 5.29220 5.41239 5.47183 6.24909 6.54938 7.23042 7.31304 8.05601 8.29902 9.25648 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082011 B = 0.003104 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.337482 B = 9019.027179 C = 9205.405776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.152 3.848 11 C -0.117 4.117 12 C 0.134 3.866 13 N -0.714 5.714 14 C 0.532 3.468 15 O -0.582 6.582 16 C -0.146 4.146 17 H 0.151 0.849 18 C -0.086 4.086 19 C -0.228 4.228 20 C -0.105 4.105 21 C -0.135 4.135 22 H 0.253 0.747 23 H 0.376 0.624 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.416 0.584 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 -24.227 -0.268 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.320 3.680 15 O -0.462 6.462 16 C -0.167 4.167 17 H 0.169 0.831 18 C -0.123 4.123 19 C -0.229 4.229 20 C -0.141 4.141 21 C -0.172 4.172 22 H 0.062 0.938 23 H 0.208 0.792 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.527 -24.256 -0.264 24.305 hybrid contribution -0.158 1.456 0.067 1.466 sum -1.685 -22.800 -0.197 22.863 Atomic orbital electron populations 1.69797 1.06576 1.26346 1.59188 1.25602 0.96490 1.01194 1.03391 0.85180 0.77234 0.78933 0.78233 1.20344 1.21856 1.20371 1.19616 0.91561 0.85445 1.41807 0.90766 1.42534 1.05744 1.01142 1.89590 1.20674 0.94101 0.84805 0.97921 1.21695 0.98455 0.92078 1.03323 1.21073 0.91765 0.84565 1.01690 1.45891 1.11284 1.04873 1.74542 1.20314 0.88790 0.84025 0.74880 1.90675 1.18741 1.85402 1.51398 1.22036 1.00312 0.88159 1.06188 0.83109 1.22762 1.02784 0.97707 0.89095 1.21456 1.05122 0.93182 1.03131 1.22855 0.98162 0.93974 0.99134 1.22616 0.90422 1.01408 1.02751 0.93819 0.79194 0.96093 0.96070 0.90637 0.90698 0.92234 0.92182 0.74674 0.89185 0.84588 0.87815 0.86246 0.90208 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.25 -14.36 9.99 84.04 0.84 -13.52 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.40 5.60 -343.46 -1.92 -40.32 16 10 C 0.15 6.08 6.26 86.38 0.54 6.62 16 11 C -0.12 -3.52 5.44 30.59 0.17 -3.35 16 12 C 0.13 3.65 5.67 86.38 0.49 4.14 16 13 N -0.71 -16.14 5.56 -463.07 -2.57 -18.72 16 14 C 0.53 13.57 7.61 87.65 0.67 14.24 16 15 O -0.58 -19.96 16.25 -3.02 -0.05 -20.01 16 16 C -0.15 -2.59 6.19 -11.54 -0.07 -2.67 16 17 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 18 C -0.09 -1.28 10.23 30.59 0.31 -0.97 16 19 C -0.23 -4.11 5.06 -52.17 -0.26 -4.37 16 20 C -0.10 -1.38 10.53 30.59 0.32 -1.06 16 21 C -0.14 -2.56 10.17 30.62 0.31 -2.25 16 22 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.38 20.14 7.67 -92.71 -0.71 19.43 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.42 6.89 8.47 -92.71 -0.79 6.11 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -71.52 312.12 1.12 -70.40 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.42 Total: 26.34 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 3.78 Total: -7.03 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.21 Total: -118.04 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -71.52 1.12 -70.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167303401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.879 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds