Wall clock time and date at job start Sun Mar 29 2020 21:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38468 * 120.80868 * 2 1 4 4 C 1.38516 * 119.21697 * 180.29477 * 3 2 1 5 5 F 1.35103 * 119.56616 * 179.72058 * 4 3 2 6 6 N 1.32024 * 120.86553 * 359.74861 * 4 3 2 7 7 C 1.31882 * 121.75971 * 359.97387 * 6 4 3 8 8 C 1.38801 * 120.69222 * 0.02562 * 7 6 4 9 9 N 1.39865 * 120.46277 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99929 * 0.02562 * 9 8 7 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46913 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00409 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99865 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46979 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47129 * 120.00126 * 17 15 13 20 20 H 1.48496 * 109.46728 * 239.99965 * 17 15 13 21 21 H 1.09001 * 109.47168 * 270.22684 * 1 2 3 22 22 H 1.09001 * 109.46907 * 30.22144 * 1 2 3 23 23 H 1.08997 * 109.47526 * 150.22184 * 1 2 3 24 24 H 1.08008 * 120.39032 * 359.97438 * 3 2 1 25 25 H 1.07997 * 119.64815 * 180.02562 * 7 6 4 26 26 H 0.96995 * 120.00058 * 179.72565 * 9 8 7 27 27 H 1.09005 * 109.47136 * 299.99974 * 10 9 8 28 28 H 1.09004 * 109.47024 * 59.99590 * 10 9 8 29 29 H 1.08997 * 109.47279 * 300.00390 * 11 10 9 30 30 H 1.09004 * 109.47330 * 59.99904 * 11 10 9 31 31 H 1.09000 * 109.46931 * 299.99969 * 12 11 10 32 32 H 1.08997 * 109.46785 * 60.00489 * 12 11 10 33 33 H 0.96998 * 119.99719 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1893 0.0000 4 6 3.6008 1.1508 -0.0062 5 9 4.2998 2.3069 -0.0120 6 7 4.2464 -0.0008 -0.0071 7 6 3.6077 -1.1547 -0.0017 8 6 2.2204 -1.1965 0.0047 9 7 1.5479 -2.4229 0.0099 10 6 2.3082 -3.6751 0.0092 11 6 1.3400 -4.8596 0.0162 12 6 2.1341 -6.1675 0.0148 13 6 1.1803 -7.3342 0.0223 14 1 0.1144 -7.1604 0.0272 15 6 1.6684 -8.6237 0.0230 16 7 2.9664 -8.8354 0.0166 17 14 0.4862 -10.0700 0.0317 18 1 -0.9111 -9.5671 0.0374 19 1 0.7095 -10.8990 -1.1799 20 1 0.7205 -10.8935 1.2450 21 1 -0.3633 0.0041 1.0277 22 1 -0.3633 0.8880 -0.5173 23 1 -0.3634 -0.8919 -0.5104 24 1 1.6959 2.1357 -0.0004 25 1 4.1702 -2.0766 -0.0022 26 1 0.5783 -2.4443 0.0184 27 1 2.9323 -3.7208 -0.8834 28 1 2.9398 -3.7172 0.8966 29 1 0.7162 -4.8138 0.9088 30 1 0.7081 -4.8177 -0.8710 31 1 2.7575 -6.2131 -0.8782 32 1 2.7661 -6.2097 0.9018 33 1 3.3098 -9.7426 0.0168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:48 Heat of formation + Delta-G solvation = -27.231162 kcal Electronic energy + Delta-G solvation = -15853.285851 eV Core-core repulsion = 13020.734934 eV Total energy + Delta-G solvation = -2832.550916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.77578 -40.32033 -36.54428 -34.29589 -33.36825 -31.56784 -29.19050 -27.97932 -26.44405 -23.88350 -22.19909 -22.04582 -20.45163 -17.65946 -17.39232 -16.82916 -16.29699 -15.95680 -14.98253 -14.88798 -14.51510 -14.46769 -13.93425 -13.48372 -13.32921 -12.81471 -12.75608 -12.33061 -12.17230 -12.08799 -11.80529 -11.02110 -10.83118 -10.60812 -10.40839 -9.87261 -9.68526 -9.56545 -9.50411 -9.19650 -8.44270 -7.44775 -6.08867 -4.12035 1.00376 1.21929 3.25607 3.33161 3.35247 3.38717 3.63862 3.79085 4.38856 4.47586 4.55098 4.78235 5.11288 5.25730 5.27439 5.33863 5.46728 5.51519 5.58147 5.66433 5.84591 5.96605 6.03442 6.43830 6.45315 6.62779 6.86497 7.18077 7.54358 7.56279 7.65879 7.82067 7.89253 8.30418 8.94603 9.52830 11.02416 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.003831 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.265653 B = 7307.767304 C = 7801.978815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.231 3.769 5 F -0.125 7.125 6 N -0.475 5.475 7 C 0.061 3.939 8 C 0.169 3.831 9 N -0.729 5.729 10 C 0.114 3.886 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.142 0.858 25 H 0.166 0.834 26 H 0.401 0.599 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 17.392 0.001 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.165 4.165 4 C 0.075 3.925 5 F -0.104 7.104 6 N -0.188 5.188 7 C -0.102 4.102 8 C 0.060 3.940 9 N -0.357 5.357 10 C -0.009 4.009 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.160 0.840 25 H 0.183 0.817 26 H 0.237 0.763 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.972 17.111 -0.009 17.367 hybrid contribution -1.571 -0.687 0.013 1.715 sum -4.543 16.424 0.004 17.041 Atomic orbital electron populations 1.20633 0.89768 1.03209 1.02788 1.19644 0.96765 0.90713 1.04789 1.21400 0.92469 0.99385 1.03233 1.17781 0.86688 0.81629 1.06405 1.91560 1.80116 1.44468 1.94298 1.66806 1.41821 0.97650 1.12517 1.22071 0.89713 0.94860 1.03586 1.18816 0.93011 0.86896 0.95318 1.45098 1.08688 1.02359 1.79559 1.21774 0.95629 0.82330 1.01191 1.21854 0.98079 0.94829 1.01023 1.19038 0.95320 0.89385 0.97640 1.21224 0.93037 0.90914 1.51019 0.92610 1.25025 0.95101 0.99107 0.95175 1.69965 1.11700 1.21040 1.50518 0.86526 0.81201 0.82554 0.77663 1.19756 1.20949 1.20955 0.90643 0.90831 0.91259 0.84024 0.81663 0.76258 0.91971 0.91981 0.92657 0.92670 0.96240 0.96242 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.64 36.01 0.35 -0.51 16 2 C -0.11 -1.18 5.93 -104.14 -0.62 -1.80 16 3 C -0.14 -1.60 9.78 -39.39 -0.39 -1.99 16 4 C 0.23 3.20 8.40 -17.37 -0.15 3.06 16 5 F -0.12 -1.74 17.29 2.25 0.04 -1.70 16 6 N -0.47 -7.25 10.37 -13.44 -0.14 -7.39 16 7 C 0.06 0.85 10.49 -17.32 -0.18 0.67 16 8 C 0.17 2.15 6.66 -83.59 -0.56 1.60 16 9 N -0.73 -9.18 5.66 -58.51 -0.33 -9.51 16 10 C 0.11 1.69 4.93 -4.05 -0.02 1.67 16 11 C -0.12 -2.17 5.27 -26.73 -0.14 -2.31 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.48 8.10 -51.93 -0.42 0.05 16 23 H 0.07 0.53 6.67 -51.93 -0.35 0.19 16 24 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 25 H 0.17 2.16 6.76 -52.49 -0.35 1.81 16 26 H 0.40 4.45 6.62 -40.82 -0.27 4.18 16 27 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 28 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 287.00 15.07 4.33 4.33 Total: -1.00 -29.84 287.00 -6.94 -36.78 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.30 Total: -1.01 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.25 Total: -12.15 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.27 Total: -42.23 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.84 -6.94 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.551 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds