Wall clock time and date at job start Sun Mar 29 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38468 * 120.80868 * 2 1 4 4 C 1.38516 * 119.21697 * 180.29477 * 3 2 1 5 5 F 1.35103 * 119.56616 * 179.72058 * 4 3 2 6 6 N 1.32024 * 120.86553 * 359.74861 * 4 3 2 7 7 C 1.31882 * 121.75971 * 359.97387 * 6 4 3 8 8 C 1.38801 * 120.69222 * 0.02562 * 7 6 4 9 9 N 1.39865 * 120.46277 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99929 * 0.02562 * 9 8 7 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46913 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00409 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99865 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46979 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47129 * 120.00126 * 17 15 13 20 20 H 1.48496 * 109.46728 * 239.99965 * 17 15 13 21 21 H 1.09001 * 109.47168 * 270.22684 * 1 2 3 22 22 H 1.09001 * 109.46907 * 30.22144 * 1 2 3 23 23 H 1.08997 * 109.47526 * 150.22184 * 1 2 3 24 24 H 1.08008 * 120.39032 * 359.97438 * 3 2 1 25 25 H 1.07997 * 119.64815 * 180.02562 * 7 6 4 26 26 H 0.96995 * 120.00058 * 179.72565 * 9 8 7 27 27 H 1.09005 * 109.47136 * 299.99974 * 10 9 8 28 28 H 1.09004 * 109.47024 * 59.99590 * 10 9 8 29 29 H 1.08997 * 109.47279 * 300.00390 * 11 10 9 30 30 H 1.09004 * 109.47330 * 59.99904 * 11 10 9 31 31 H 1.09000 * 109.46931 * 299.99969 * 12 11 10 32 32 H 1.08997 * 109.46785 * 60.00489 * 12 11 10 33 33 H 0.96998 * 119.99719 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1893 0.0000 4 6 3.6008 1.1508 -0.0062 5 9 4.2998 2.3069 -0.0120 6 7 4.2464 -0.0008 -0.0071 7 6 3.6077 -1.1547 -0.0017 8 6 2.2204 -1.1965 0.0047 9 7 1.5479 -2.4229 0.0099 10 6 2.3082 -3.6751 0.0092 11 6 1.3400 -4.8596 0.0162 12 6 2.1341 -6.1675 0.0148 13 6 1.1803 -7.3342 0.0223 14 1 0.1144 -7.1604 0.0272 15 6 1.6684 -8.6237 0.0230 16 7 2.9664 -8.8354 0.0166 17 14 0.4862 -10.0700 0.0317 18 1 -0.9111 -9.5671 0.0374 19 1 0.7095 -10.8990 -1.1799 20 1 0.7205 -10.8935 1.2450 21 1 -0.3633 0.0041 1.0277 22 1 -0.3633 0.8880 -0.5173 23 1 -0.3634 -0.8919 -0.5104 24 1 1.6959 2.1357 -0.0004 25 1 4.1702 -2.0766 -0.0022 26 1 0.5783 -2.4443 0.0184 27 1 2.9323 -3.7208 -0.8834 28 1 2.9398 -3.7172 0.8966 29 1 0.7162 -4.8138 0.9088 30 1 0.7081 -4.8177 -0.8710 31 1 2.7575 -6.2131 -0.8782 32 1 2.7661 -6.2097 0.9018 33 1 3.3098 -9.7426 0.0168 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:47 Heat of formation + Delta-G solvation = -45.557594 kcal Electronic energy + Delta-G solvation = -15854.080545 eV Core-core repulsion = 13020.734934 eV Total energy + Delta-G solvation = -2833.345610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.82234 -41.30791 -37.75224 -35.72372 -34.73514 -33.18240 -30.37888 -28.89013 -27.97208 -25.36882 -23.46550 -23.06876 -21.97680 -18.79592 -18.41955 -18.34199 -17.76511 -17.00464 -16.50002 -16.30335 -15.94997 -15.45428 -14.89075 -14.54341 -14.40743 -14.06552 -13.83558 -13.67232 -13.59782 -13.43489 -12.82355 -12.79630 -12.51036 -12.30969 -11.85739 -11.45813 -11.23204 -11.16908 -10.69061 -10.55245 -10.42354 -8.47737 -8.19824 -6.30331 0.06109 0.22393 1.41292 1.42259 1.54501 2.29000 2.43384 2.64172 2.80209 3.14593 3.59081 3.68690 3.84643 4.13648 4.24607 4.34088 4.51734 4.53827 4.62536 4.77129 4.80060 4.97462 5.00770 5.16367 5.19552 5.21426 5.51615 5.61633 5.73459 5.85620 6.06945 6.25359 6.59745 6.82548 6.87791 7.39339 8.92105 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.053294 B = 0.003831 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.265653 B = 7307.767304 C = 7801.978815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.132 4.132 4 C 0.211 3.789 5 F -0.131 7.131 6 N -0.507 5.507 7 C 0.042 3.958 8 C 0.162 3.838 9 N -0.722 5.722 10 C 0.128 3.872 11 C -0.103 4.103 12 C 0.024 3.976 13 C -0.541 4.541 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.176 0.824 25 H 0.163 0.837 26 H 0.411 0.589 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 18.319 0.011 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.154 4.154 4 C 0.055 3.945 5 F -0.110 7.110 6 N -0.221 5.221 7 C -0.120 4.120 8 C 0.054 3.946 9 N -0.351 5.351 10 C 0.004 3.996 11 C -0.141 4.141 12 C -0.014 4.014 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.184 1.184 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.107 0.893 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.193 0.807 25 H 0.180 0.820 26 H 0.249 0.751 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.472 18.056 0.001 18.867 hybrid contribution -0.781 -0.909 0.011 1.199 sum -6.253 17.147 0.011 18.252 Atomic orbital electron populations 1.20759 0.87048 1.04546 1.04023 1.20044 0.98549 0.89697 1.02575 1.21711 0.91236 1.00930 1.01507 1.18152 0.87882 0.81185 1.07237 1.91541 1.80464 1.44582 1.94425 1.66702 1.43113 0.98477 1.13828 1.22085 0.90588 0.94572 1.04784 1.18867 0.92666 0.87481 0.95617 1.44788 1.08927 1.01453 1.79962 1.21405 0.94822 0.82367 1.01033 1.21555 0.97852 0.93016 1.01687 1.18946 0.95031 0.92086 0.95342 1.21721 0.93857 0.92060 1.50283 0.91898 1.25959 0.96750 1.02301 0.94867 1.70096 1.13713 1.21745 1.51776 0.85430 0.79392 0.78797 0.77618 1.18393 1.20625 1.20631 0.89291 0.88676 0.90801 0.80681 0.81991 0.75055 0.92304 0.92310 0.91914 0.91931 0.98576 0.98578 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.64 71.24 0.69 -0.59 16 2 C -0.10 -1.86 5.93 -19.55 -0.12 -1.98 16 3 C -0.13 -2.62 9.78 22.39 0.22 -2.41 16 4 C 0.21 5.69 8.40 84.73 0.71 6.41 16 5 F -0.13 -3.57 17.29 44.97 0.78 -2.79 16 6 N -0.51 -15.61 10.37 -196.44 -2.04 -17.64 16 7 C 0.04 1.18 10.49 84.82 0.89 2.07 16 8 C 0.16 3.91 6.66 38.25 0.25 4.16 16 9 N -0.72 -16.92 5.66 -339.02 -1.92 -18.84 16 10 C 0.13 3.73 4.93 86.38 0.43 4.15 16 11 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 12 C 0.02 1.16 4.97 29.85 0.15 1.31 16 13 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 15 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 16 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 17 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 21 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 23 H 0.07 0.85 6.67 -2.39 -0.02 0.83 16 24 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 25 H 0.16 4.42 6.76 -2.91 -0.02 4.40 16 26 H 0.41 8.03 6.62 -92.71 -0.61 7.41 16 27 H 0.06 1.76 7.97 -2.38 -0.02 1.74 16 28 H 0.06 1.76 7.97 -2.38 -0.02 1.74 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -64.75 287.00 3.71 -61.03 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.50 Total: 7.46 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.08 Total: -18.99 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -3.67 Total: -91.62 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -64.75 3.71 -61.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.476 kcal (2) G-P(sol) polarization free energy of solvation -64.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds