Wall clock time and date at job start Sun Mar 29 2020 21:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37845 * 119.56452 * 2 1 4 4 C 1.39525 * 119.12980 * 180.02562 * 3 2 1 5 5 N 1.39180 * 120.85454 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00197 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46840 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.39367 * 118.29853 * 0.25801 * 4 3 2 18 18 C 1.38209 * 119.04537 * 359.52180 * 17 4 3 19 19 F 1.35109 * 119.60756 * 180.20945 * 18 17 4 20 20 N 1.32033 * 119.56172 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47139 * 89.99388 * 1 2 3 22 22 H 1.08997 * 109.47118 * 209.99876 * 1 2 3 23 23 H 1.08999 * 109.46893 * 329.99210 * 1 2 3 24 24 H 1.08006 * 120.43721 * 0.03060 * 3 2 1 25 25 H 0.97005 * 119.99355 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.46813 * 60.00254 * 6 5 4 27 27 H 1.08992 * 109.47397 * 300.00316 * 6 5 4 28 28 H 1.09002 * 109.47398 * 300.00326 * 7 6 5 29 29 H 1.09001 * 109.47194 * 60.00507 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 32 32 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.47916 * 179.72252 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1990 0.0000 4 6 3.5823 1.1884 -0.0005 5 7 4.3052 2.3778 -0.0011 6 6 5.7698 2.3448 -0.0022 7 6 6.3120 3.7756 -0.0033 8 6 7.8416 3.7412 -0.0051 9 6 8.3757 5.1504 -0.0055 10 1 7.6925 5.9868 -0.0042 11 6 9.7366 5.3719 -0.0066 12 7 10.2027 6.6016 -0.0064 13 14 10.9183 3.9251 -0.0068 14 1 11.2304 3.5411 -1.4069 15 1 12.1710 4.3091 0.6921 16 1 10.2929 2.7750 0.6942 17 6 4.2337 -0.0437 -0.0066 18 6 3.4792 -1.2016 -0.0017 19 9 4.0989 -2.4022 -0.0032 20 7 2.1584 -1.1485 -0.0005 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.6471 2.1343 0.0005 25 1 3.8391 3.2285 -0.0007 26 1 6.1208 1.8230 -0.8925 27 1 6.1222 1.8230 0.8874 28 1 5.9596 4.2971 -0.8932 29 1 5.9611 4.2978 0.8868 30 1 8.1944 3.2196 0.8846 31 1 8.1923 3.2192 -0.8953 32 1 11.1601 6.7574 -0.0075 33 1 5.3126 -0.0930 -0.0117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:01 Heat of formation + Delta-G solvation = -26.695608 kcal Electronic energy + Delta-G solvation = -15808.069439 eV Core-core repulsion = 12975.541746 eV Total energy + Delta-G solvation = -2832.527693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.97826 -40.25063 -36.97042 -34.07091 -32.49355 -32.11325 -30.17455 -27.99724 -26.68867 -23.50785 -23.02979 -21.40812 -20.43186 -17.86620 -17.44307 -16.67815 -16.19219 -16.09191 -15.37620 -15.11591 -14.79328 -14.09399 -14.06612 -13.65883 -13.44731 -12.95466 -12.75743 -12.44958 -12.10488 -12.07001 -11.94863 -11.19380 -11.13193 -10.67013 -10.15176 -9.95836 -9.81265 -9.68799 -9.32262 -8.95078 -8.63141 -7.96210 -6.13400 -4.12949 0.93054 1.35986 3.18588 3.24761 3.33002 3.34957 3.59306 3.60184 4.36985 4.39811 4.87290 4.94098 5.06534 5.20064 5.27240 5.32233 5.38407 5.42987 5.59330 5.68669 5.78507 5.78793 5.94150 6.26586 6.27726 6.57002 6.64004 7.05771 7.11072 7.24173 7.52320 7.67528 7.75967 8.42265 8.90020 9.48195 10.99829 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040456 B = 0.004208 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.949268 B = 6652.738449 C = 7313.637110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.196 3.804 3 C -0.265 4.265 4 C 0.285 3.715 5 N -0.721 5.721 6 C 0.111 3.889 7 C -0.113 4.113 8 C -0.010 4.010 9 C -0.525 4.525 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.265 1.265 17 C -0.284 4.284 18 C 0.349 3.651 19 F -0.116 7.116 20 N -0.564 5.564 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.138 0.862 25 H 0.406 0.594 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 -11.915 0.020 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.060 3.940 3 C -0.290 4.290 4 C 0.169 3.831 5 N -0.347 5.347 6 C -0.013 4.013 7 C -0.151 4.151 8 C -0.048 4.048 9 C -0.563 4.563 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.708 3.292 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.311 4.311 18 C 0.197 3.803 19 F -0.095 7.095 20 N -0.284 5.284 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.155 0.845 25 H 0.242 0.758 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.398 -12.607 0.025 20.684 hybrid contribution 1.340 0.231 -0.032 1.361 sum -15.058 -12.376 -0.007 19.491 Atomic orbital electron populations 1.20732 0.88369 1.03603 1.03293 1.20578 0.96323 0.86271 0.90813 1.21371 0.92327 0.99895 1.15453 1.17795 0.90678 0.86792 0.87834 1.45009 1.06781 1.04949 1.77946 1.21817 0.77545 1.00585 1.01307 1.21685 0.99118 0.92311 1.01975 1.19499 0.90322 0.98375 0.96619 1.21071 0.92509 0.91284 1.51413 0.91013 1.25035 0.98399 0.95617 0.94391 1.69906 1.13720 1.19671 1.50705 0.86770 0.80573 0.83297 0.78597 1.20202 1.21277 1.18977 1.21163 1.01855 0.90479 1.17612 1.17689 0.87368 0.80198 0.95085 1.91602 1.80958 1.43831 1.93132 1.66833 1.07927 1.31173 1.22480 0.90113 0.90332 0.90370 0.84462 0.75797 0.91902 0.91888 0.91969 0.91943 0.96316 0.96744 0.92602 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.01 0.37 -0.42 16 2 C 0.20 2.25 6.77 -82.65 -0.56 1.69 16 3 C -0.26 -2.89 9.62 -39.25 -0.38 -3.27 16 4 C 0.29 3.57 6.69 -83.62 -0.56 3.01 16 5 N -0.72 -8.82 5.72 -58.48 -0.33 -9.15 16 6 C 0.11 1.57 4.95 -4.04 -0.02 1.55 16 7 C -0.11 -1.96 5.27 -26.73 -0.14 -2.10 16 8 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 9 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 10 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 11 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 13 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.06 6.54 56.52 0.37 -5.70 16 17 C -0.28 -3.79 9.35 -39.17 -0.37 -4.16 16 18 C 0.35 4.96 8.40 -17.41 -0.15 4.82 16 19 F -0.12 -1.66 17.29 2.25 0.04 -1.62 16 20 N -0.56 -7.91 10.28 -9.90 -0.10 -8.01 16 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 24 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 25 H 0.41 4.29 8.50 -40.82 -0.35 3.95 16 26 H 0.06 0.89 7.98 -51.93 -0.41 0.47 16 27 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.14 1.83 6.89 -52.49 -0.36 1.47 16 LS Contribution 287.02 15.07 4.33 4.33 Total: -1.00 -30.66 287.02 -6.74 -37.40 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.42 Total: -0.76 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.35 Total: -12.15 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.34 Total: -43.65 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.66 -6.74 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.709 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds